Search Results
Mutant Information |
---|
Mutant Name | FN-27 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-27 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 2
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr7 | 5927618 | T-G | Homo | INTERGENIC | |
SBS | Chr10 | 5621424 | C-T | Homo | INTRON |
Deletions: 20
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 139001 | 179000 | 40000 | 11 |
Deletion | Chr6 | 1938990 | 1938999 | 9 | LOC_Os06g04520 |
Deletion | Chr8 | 4633841 | 4633845 | 4 | LOC_Os08g08140 |
Deletion | Chr12 | 11302870 | 11302872 | 2 | |
Deletion | Chr9 | 12032374 | 12032431 | 57 | |
Deletion | Chr12 | 12260476 | 12260488 | 12 | LOC_Os12g21784 |
Deletion | Chr11 | 16669642 | 16669643 | 1 | |
Deletion | Chr9 | 16811752 | 16811753 | 1 | |
Deletion | Chr11 | 17055151 | 17055152 | 1 | |
Deletion | Chr10 | 20395138 | 20395143 | 5 | LOC_Os10g38090 |
Deletion | Chr4 | 25295001 | 25400000 | 105000 | 19 |
Deletion | Chr8 | 25329001 | 25396000 | 67000 | 15 |
Deletion | Chr4 | 25612225 | 25614814 | 2589 | LOC_Os04g43300 |
Deletion | Chr8 | 26142273 | 26142297 | 24 | LOC_Os08g41390 |
Deletion | Chr6 | 27288677 | 27288679 | 2 | |
Deletion | Chr5 | 27928703 | 27928707 | 4 | |
Deletion | Chr3 | 28776197 | 28776210 | 13 | |
Deletion | Chr3 | 30342815 | 30342826 | 11 | |
Deletion | Chr3 | 32142039 | 32142043 | 4 | |
Deletion | Chr1 | 41064268 | 41064300 | 32 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 19526014 | 19526014 | 1 | |
Insertion | Chr2 | 73997 | 73997 | 1 | |
Insertion | Chr2 | 33915860 | 33915860 | 1 | |
Insertion | Chr6 | 11552931 | 11552931 | 1 | LOC_Os06g20140 |
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 2561401 | 14315772 | |
Inversion | Chr8 | 25091651 | 25328850 | 2 |
Inversion | Chr4 | 25296076 | 29480891 | LOC_Os04g49394 |
Inversion | Chr2 | 27790399 | 29195322 | 2 |
No Translocation