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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13308103	T-G	HOMO	INTERGENIC
SBS	Chr1	23106130	A-G	HOMO	UTR_3_PRIME
SBS	Chr1	29401526	G-C	HOMO	INTERGENIC
SBS	Chr1	33907505	A-T	HET	INTRON
SBS	Chr10	15235987	C-T	HET	INTERGENIC
SBS	Chr11	8901336	G-A	HOMO	INTERGENIC
SBS	Chr12	13992112	A-T	HET	INTRON
SBS	Chr12	18146865	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30240
SBS	Chr2	294985	A-T	HET	INTERGENIC
SBS	Chr3	15500138	T-C	HET	INTERGENIC
SBS	Chr3	16106576	T-C	HET	INTRON
SBS	Chr3	3868971	A-G	HOMO	INTRON
SBS	Chr4	16747233	C-T	HET	INTERGENIC
SBS	Chr4	1787471	C-T	HET	INTERGENIC
SBS	Chr4	23338071	G-T	HET	INTERGENIC
SBS	Chr5	12453474	G-T	HET	UTR_5_PRIME
SBS	Chr5	12453475	C-T	HET	UTR_5_PRIME
SBS	Chr5	18985889	T-G	HET	INTERGENIC
SBS	Chr5	23848882	T-C	HET	INTRON
SBS	Chr5	4025239	G-T	HET	INTERGENIC
SBS	Chr6	10824270	A-T	HOMO	INTERGENIC
SBS	Chr6	27233715	A-G	HOMO	INTERGENIC
SBS	Chr7	11195557	C-A	HET	STOP_GAINED	LOC_Os07g18890
SBS	Chr7	5490354	C-T	HET	INTERGENIC
SBS	Chr7	7380734	T-C	HET	INTERGENIC
SBS	Chr8	11359339	A-T	HET	INTERGENIC
SBS	Chr8	19544909	G-T	HET	INTERGENIC
SBS	Chr8	2596687	C-T	HOMO	INTERGENIC
SBS	Chr9	21424037	G-A	HOMO	INTERGENIC
SBS	Chr9	7260586	T-C	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3145704	3145706	2
Deletion	Chr12	5747020	5747023	3
Deletion	Chr5	7507749	7507750	1
Deletion	Chr4	13298563	13298570	7	LOC_Os04g23300
Deletion	Chr12	14032807	14032809	2
Deletion	Chr2	15282679	15289986	7307	2
Deletion	Chr3	15559656	15592983	33327	5
Deletion	Chr3	15560001	15595000	35000	5
Deletion	Chr1	15748161	15748163	2
Deletion	Chr11	19069264	19069266	2	LOC_Os11g32270
Deletion	Chr9	20104233	20104236	3
Deletion	Chr11	20381733	20381744	11
Deletion	Chr11	22062764	22062766	2
Deletion	Chr12	23166203	23166205	2
Deletion	Chr12	24799429	24799439	10
Deletion	Chr12	25358507	25358512	5	LOC_Os12g40950
Deletion	Chr5	25529711	25529719	8
Deletion	Chr1	26316323	26316324	1
Deletion	Chr1	26695735	26696991	1256
Deletion	Chr1	29401538	29401556	18
Deletion	Chr1	32211961	32211970	9
Deletion	Chr2	34207685	34207686	1
Deletion	Chr4	34897341	34897352	11

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21857128	21857131	4
Insertion	Chr11	25439278	25439287	10
Insertion	Chr5	24432561	24432561	1
Insertion	Chr6	22279922	22279923	2
Insertion	Chr8	10173562	10173563	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2813194	3236813	2
Inversion	Chr1	2817309	3236815	LOC_Os01g06820
Inversion	Chr4	8914178	10714310
Inversion	Chr7	25786314	25924846

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1823402	Chr1	34016398
Translocation	Chr3	2570542	Chr1	8218342
Translocation	Chr6	4016030	Chr5	20684292	LOC_Os06g08290
Translocation	Chr6	5418386	Chr1	3236815	LOC_Os01g06820
Translocation	Chr8	11601887	Chr4	61845
Translocation	Chr11	11660577	Chr6	7698481	LOC_Os06g13860
Translocation	Chr5	14831585	Chr3	17596459
Translocation	Chr8	17211283	Chr3	31169792

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