Search Results
Mutant Information |
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Mutant Name | FN-272 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-272 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 30
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13308103 | T-G | HOMO | INTERGENIC | |
SBS | Chr1 | 23106130 | A-G | HOMO | UTR_3_PRIME | |
SBS | Chr1 | 29401526 | G-C | HOMO | INTERGENIC | |
SBS | Chr1 | 33907505 | A-T | HET | INTRON | |
SBS | Chr2 | 294985 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 3868971 | A-G | HOMO | INTRON | |
SBS | Chr3 | 15500138 | T-C | HET | INTERGENIC | |
SBS | Chr3 | 16106576 | T-C | HET | INTRON | |
SBS | Chr4 | 1787471 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 16747233 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 23338071 | G-T | HET | INTERGENIC | |
SBS | Chr5 | 4025239 | G-T | HET | INTERGENIC | |
SBS | Chr5 | 12453474 | G-T | HET | UTR_5_PRIME | |
SBS | Chr5 | 12453475 | C-T | HET | UTR_5_PRIME | |
SBS | Chr5 | 18985889 | T-G | HET | INTERGENIC | |
SBS | Chr5 | 23848882 | T-C | HET | INTRON | |
SBS | Chr6 | 10824270 | A-T | HOMO | INTERGENIC | |
SBS | Chr6 | 27233715 | A-G | HOMO | INTERGENIC | |
SBS | Chr7 | 5490354 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 7380734 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 11195557 | C-A | HET | STOP_GAINED | LOC_Os07g18890 |
SBS | Chr8 | 2596687 | C-T | HOMO | INTERGENIC | |
SBS | Chr8 | 11359339 | A-T | HET | INTERGENIC | |
SBS | Chr8 | 19544909 | G-T | HET | INTERGENIC | |
SBS | Chr9 | 7260586 | T-C | HOMO | INTERGENIC | |
SBS | Chr9 | 21424037 | G-A | HOMO | INTERGENIC | |
SBS | Chr10 | 15235987 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 8901336 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 13992112 | A-T | HET | INTRON | |
SBS | Chr12 | 18146865 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g30240 |
Deletions: 23
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 3145704 | 3145706 | 2 | |
Deletion | Chr12 | 5747020 | 5747023 | 3 | |
Deletion | Chr5 | 7507749 | 7507750 | 1 | |
Deletion | Chr4 | 13298563 | 13298570 | 7 | LOC_Os04g23300 |
Deletion | Chr12 | 14032807 | 14032809 | 2 | |
Deletion | Chr2 | 15282679 | 15289986 | 7307 | 2 |
Deletion | Chr3 | 15559656 | 15592983 | 33327 | 5 |
Deletion | Chr3 | 15560001 | 15595000 | 35000 | 5 |
Deletion | Chr1 | 15748161 | 15748163 | 2 | |
Deletion | Chr11 | 19069264 | 19069266 | 2 | LOC_Os11g32270 |
Deletion | Chr9 | 20104233 | 20104236 | 3 | |
Deletion | Chr11 | 20381733 | 20381744 | 11 | |
Deletion | Chr11 | 22062764 | 22062766 | 2 | |
Deletion | Chr12 | 23166203 | 23166205 | 2 | |
Deletion | Chr12 | 24799429 | 24799439 | 10 | |
Deletion | Chr12 | 25358507 | 25358512 | 5 | LOC_Os12g40950 |
Deletion | Chr5 | 25529711 | 25529719 | 8 | |
Deletion | Chr1 | 26316323 | 26316324 | 1 | |
Deletion | Chr1 | 26695735 | 26696991 | 1256 | |
Deletion | Chr1 | 29401538 | 29401556 | 18 | |
Deletion | Chr1 | 32211961 | 32211970 | 9 | |
Deletion | Chr2 | 34207685 | 34207686 | 1 | |
Deletion | Chr4 | 34897341 | 34897352 | 11 |
Insertions: 5
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 2813194 | 3236813 | 2 |
Inversion | Chr1 | 2817309 | 3236815 | LOC_Os01g06820 |
Inversion | Chr4 | 8914178 | 10714310 | |
Inversion | Chr7 | 25786314 | 25924846 |
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 1823402 | Chr1 | 34016398 | |
Translocation | Chr3 | 2570542 | Chr1 | 8218342 | |
Translocation | Chr6 | 4016030 | Chr5 | 20684292 | LOC_Os06g08290 |
Translocation | Chr6 | 5418386 | Chr1 | 3236815 | LOC_Os01g06820 |
Translocation | Chr8 | 11601887 | Chr4 | 61845 | |
Translocation | Chr11 | 11660577 | Chr6 | 7698481 | LOC_Os06g13860 |
Translocation | Chr5 | 14831585 | Chr3 | 17596459 | |
Translocation | Chr8 | 17211283 | Chr3 | 31169792 |