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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9146398	A-C	HOMO	INTERGENIC
SBS	Chr1	19821271	C-T	HET	INTERGENIC
SBS	Chr1	24185770	G-A	HET	INTERGENIC
SBS	Chr1	35527085	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	37601663	T-A	HET	INTERGENIC
SBS	Chr1	39244488	C-G	HET	START_GAINED	LOC_Os01g67520
SBS	Chr2	8709431	G-A	HET	INTERGENIC
SBS	Chr3	11591995	G-A	HET	INTERGENIC
SBS	Chr4	20921635	A-T	HET	INTERGENIC
SBS	Chr4	26753578	A-T	HOMO	INTRON
SBS	Chr5	12183830	T-A	HET	INTERGENIC
SBS	Chr6	6873852	C-A	HET	INTERGENIC
SBS	Chr7	8184155	C-T	HET	INTERGENIC
SBS	Chr7	20858481	G-A	HET	INTERGENIC
SBS	Chr7	21458058	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g35840
SBS	Chr7	23116902	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g38490
SBS	Chr7	25007194	A-T	HET	INTERGENIC
SBS	Chr8	3348538	T-G	HET	INTERGENIC
SBS	Chr8	13668908	A-G	HOMO	INTRON
SBS	Chr9	2930964	G-A	HET	INTERGENIC
SBS	Chr9	10046206	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16430
SBS	Chr9	16842752	G-A	HET	INTERGENIC
SBS	Chr10	4934277	C-A	HOMO	INTERGENIC
SBS	Chr10	9266016	A-G	HOMO	INTERGENIC
SBS	Chr10	11334327	G-A	HOMO	INTRON
SBS	Chr11	241126	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g01380
SBS	Chr12	3252200	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	23672100	A-G	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	673988	673990	2
Deletion	Chr12	2041502	2041514	12
Deletion	Chr3	4849267	4849284	17
Deletion	Chr3	5173482	5313020	139538	26
Deletion	Chr8	9686734	9711829	25095	7
Deletion	Chr1	11766550	11766553	3
Deletion	Chr11	12594575	12594576	1
Deletion	Chr1	15129660	15129665	5
Deletion	Chr12	15339244	15339269	25
Deletion	Chr5	16246063	16246068	5
Deletion	Chr3	16280426	16280434	8	LOC_Os03g28289
Deletion	Chr5	16471938	16471944	6	LOC_Os05g28170
Deletion	Chr3	16612057	16612085	28
Deletion	Chr11	17908163	17908203	40
Deletion	Chr6	19960722	19960731	9	2
Deletion	Chr8	21846652	21846659	7	LOC_Os08g34750
Deletion	Chr9	22395953	22395999	46
Deletion	Chr3	24393934	24874193	480259	55
Deletion	Chr8	24439253	24441317	2064
Deletion	Chr2	26239410	26239419	9
Deletion	Chr3	28661239	28661242	3
Deletion	Chr2	28675614	28675615	1
Deletion	Chr2	28675678	28675679	1
Deletion	Chr2	29629855	29629861	6
Deletion	Chr4	33536195	33536199	4
Deletion	Chr1	39063966	39170009	106043	15

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	6402287	6402290	4
Insertion	Chr1	7052239	7052240	2
Insertion	Chr2	19293462	19293463	2
Insertion	Chr2	28012238	28012239	2
Insertion	Chr4	32487617	32487618	2
Insertion	Chr8	10678210	10678211	2
Insertion	Chr8	24124414	24124415	2
Insertion	Chr3	4390080	4390080	1
Insertion	Chr4	30178775	30178775	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1829169	16200536

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3953164	Chr3	24874187	LOC_Os07g07880
Translocation	Chr7	3953187	Chr3	24393948	LOC_Os07g07880
Translocation	Chr7	27716784	Chr3	5313016	LOC_Os07g46450
Translocation	Chr7	27716790	Chr3	5173644	LOC_Os07g46450

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