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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1276263	T-G	HET	INTERGENIC
SBS	Chr1	19201939	T-A	HET	INTERGENIC
SBS	Chr1	21307269	G-A	HOMO	INTRON
SBS	Chr1	40488205	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g69990
SBS	Chr1	40488206	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g69990
SBS	Chr10	4499147	T-C	HOMO	INTRON
SBS	Chr11	14729663	G-A	HET	INTERGENIC
SBS	Chr11	16191804	C-T	HET	INTERGENIC
SBS	Chr11	7806242	G-A	HET	INTERGENIC
SBS	Chr12	10608311	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	12610525	G-T	HOMO	INTRON
SBS	Chr12	26718513	A-G	HET	INTERGENIC
SBS	Chr2	3343332	A-T	HOMO	INTERGENIC
SBS	Chr3	25753389	C-G	HET	INTRON
SBS	Chr3	26209529	C-T	HET	INTRON
SBS	Chr3	30729365	G-A	HET	INTRON
SBS	Chr4	22484090	G-A	HET	INTERGENIC
SBS	Chr5	1018805	G-C	HET	INTERGENIC
SBS	Chr5	14129105	G-A	HET	INTERGENIC
SBS	Chr5	16133376	G-A	HET	INTERGENIC
SBS	Chr5	16133377	C-A	HET	INTERGENIC
SBS	Chr5	1682074	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	21312318	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g35960
SBS	Chr6	20454048	G-A	HET	INTERGENIC
SBS	Chr6	29806092	G-A	HOMO	INTERGENIC
SBS	Chr6	30582379	T-G	HET	INTRON
SBS	Chr7	16554116	C-A	HET	INTRON
SBS	Chr7	26349033	C-T	HET	INTRON
SBS	Chr7	26475507	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44320
SBS	Chr7	26585213	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44520
SBS	Chr7	26585218	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g44520
SBS	Chr7	8885360	C-T	HET	INTERGENIC
SBS	Chr8	12848467	T-C	HOMO	INTRON
SBS	Chr8	18323289	G-A	HET	INTRON
SBS	Chr8	20309935	C-T	HOMO	INTERGENIC
SBS	Chr8	21262826	T-C	HOMO	INTERGENIC
SBS	Chr8	28403398	T-A	HET	INTRON
SBS	Chr9	2526641	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04740

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2678167	2678169	2	LOC_Os05g05390
Deletion	Chr5	2678173	2678175	2	LOC_Os05g05390
Deletion	Chr1	13029840	13029865	25
Deletion	Chr9	14202343	14202346	3
Deletion	Chr10	14771805	14771813	8
Deletion	Chr7	18462219	18462228	9	LOC_Os07g31190
Deletion	Chr3	18822392	18822396	4
Deletion	Chr3	20165639	20165641	2
Deletion	Chr4	21798759	21798770	11
Deletion	Chr6	21817983	21817986	3
Deletion	Chr5	22136475	22136490	15
Deletion	Chr5	22732748	22732753	5
Deletion	Chr3	23942933	23942934	1	LOC_Os03g42930
Deletion	Chr4	27285735	27285736	1
Deletion	Chr5	27461055	27461060	5	LOC_Os05g47890
Deletion	Chr2	28175254	28175285	31
Deletion	Chr1	28610468	28610474	6
Deletion	Chr1	29501001	29517000	16000	3
Deletion	Chr1	31661957	31661962	5	LOC_Os01g55070
Deletion	Chr1	39830485	39830494	9	LOC_Os01g68570
Deletion	Chr1	40856729	40856737	8	LOC_Os01g70540

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	4876397	4876399	3
Insertion	Chr11	1893635	1893636	2
Insertion	Chr3	12367866	12367868	3
Insertion	Chr3	28653564	28653564	1
Insertion	Chr7	14662587	14662587	1
Insertion	Chr8	15195584	15195595	12
Insertion	Chr8	28246228	28246234	7

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	29425343	29516339	LOC_Os01g51190

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13737708	Chr10	8063297	LOC_Os10g15180
Translocation	Chr5	20725568	Chr2	5558377	LOC_Os05g34880
Translocation	Chr9	21809955	Chr4	22380836	LOC_Os09g37840

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