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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24948092	G-A	HOMO	INTERGENIC
SBS	Chr1	24948094	G-T	HOMO	INTERGENIC
SBS	Chr2	8434185	A-T	HOMO	INTRON
SBS	Chr2	29616819	A-G	HET	INTERGENIC
SBS	Chr3	23825676	A-G	HET	INTERGENIC
SBS	Chr4	13755037	C-T	HOMO	INTERGENIC
SBS	Chr4	14121693	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g24590
SBS	Chr4	34499168	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	35246995	G-A	HET	INTERGENIC
SBS	Chr5	2899947	T-C	HOMO	INTERGENIC
SBS	Chr5	22463770	C-G	HET	INTERGENIC
SBS	Chr6	14951068	A-G	HET	INTERGENIC
SBS	Chr7	14221291	C-T	HOMO	INTERGENIC
SBS	Chr7	16371935	C-T	HOMO	INTERGENIC
SBS	Chr7	26077487	T-A	HET	INTERGENIC
SBS	Chr8	822938	A-T	HET	INTERGENIC
SBS	Chr9	13418448	A-G	HET	INTERGENIC
SBS	Chr9	18735551	T-A	HET	INTRON
SBS	Chr10	3002682	A-C	HET	INTERGENIC
SBS	Chr11	1117111	T-C	HET	INTERGENIC
SBS	Chr11	8155086	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14520
SBS	Chr11	8501809	G-A	HET	INTERGENIC
SBS	Chr12	3384062	G-A	HET	INTERGENIC
SBS	Chr12	8270532	T-A	HET	INTERGENIC
SBS	Chr12	17029000	G-A	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	560916	560920	4
Deletion	Chr3	1581013	1581020	7
Deletion	Chr11	6318399	6318404	5	LOC_Os11g11380
Deletion	Chr9	6451009	6451025	16
Deletion	Chr5	6641074	6641077	3
Deletion	Chr9	6839144	6839145	1
Deletion	Chr3	9535433	9535435	2
Deletion	Chr11	9680216	9680219	3	LOC_Os11g17370
Deletion	Chr1	11850130	11850165	35
Deletion	Chr1	12880507	12880513	6	LOC_Os01g22910
Deletion	Chr10	14290023	14290027	4
Deletion	Chr11	14319702	14319703	1
Deletion	Chr3	17595630	17595633	3
Deletion	Chr3	17745682	17745839	157	LOC_Os03g31170
Deletion	Chr10	18493171	18493184	13
Deletion	Chr9	20521180	20521186	6
Deletion	Chr11	21822416	21822432	16
Deletion	Chr1	24183919	24183927	8	LOC_Os01g42520
Deletion	Chr4	34941803	34941922	119

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	2994270	2994271	2
Insertion	Chr1	40840114	40840116	3
Insertion	Chr8	24023471	24023473	3
Insertion	Chr11	19118308	19118309	2
Insertion	Chr11	22168333	22168334	2
Insertion	Chr5	5462300	5462301	2
Insertion	Chr5	16375533	16375534	2
Insertion	Chr7	11319117	11319118	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1589692	20963874	LOC_Os04g34650

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	4247524	Chr3	25764671	LOC_Os04g07980
Translocation	Chr9	8901569	Chr1	11806768	2
Translocation	Chr12	9499670	Chr10	19652790
Translocation	Chr10	16766288	Chr9	5562755

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