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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12514939	G-T	HET	INTRON
SBS	Chr1	28124056	G-A	HET	INTERGENIC
SBS	Chr10	15043871	C-T	HOMO	INTERGENIC
SBS	Chr10	22967845	G-A	HET	INTERGENIC
SBS	Chr10	3818259	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g07248
SBS	Chr11	10845900	C-T	HET	INTRON
SBS	Chr11	13893192	T-C	HET	INTRON
SBS	Chr11	16954827	T-C	HET	INTERGENIC
SBS	Chr11	21682420	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g36719
SBS	Chr11	26698469	T-C	HET	INTERGENIC
SBS	Chr12	15080919	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25980
SBS	Chr12	17264618	C-A	HET	INTRON
SBS	Chr12	1926022	C-T	HET	SPLICE_SITE_DONOR	LOC_Os12g04520
SBS	Chr12	26986387	G-A	HOMO	INTERGENIC
SBS	Chr12	27207326	C-A	HOMO	INTERGENIC
SBS	Chr12	4572535	T-C	HET	INTERGENIC
SBS	Chr2	30277452	G-T	HOMO	INTRON
SBS	Chr2	32108794	C-T	HOMO	INTERGENIC
SBS	Chr3	15525151	G-A	HOMO	INTERGENIC
SBS	Chr4	10842004	A-G	HET	INTRON
SBS	Chr4	19950274	G-T	HOMO	INTERGENIC
SBS	Chr4	24344997	C-A	HOMO	INTERGENIC
SBS	Chr4	34563303	T-A	HET	INTERGENIC
SBS	Chr5	13509023	G-A	HET	INTERGENIC
SBS	Chr6	1275066	C-T	HET	INTERGENIC
SBS	Chr7	11070203	C-T	HOMO	INTRON
SBS	Chr7	5532845	T-C	HOMO	INTERGENIC
SBS	Chr7	6894587	C-T	HOMO	INTERGENIC
SBS	Chr7	7075499	A-T	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1118471	1118472	1
Deletion	Chr5	1979420	1979426	6
Deletion	Chr3	2075735	2075741	6	LOC_Os03g04480
Deletion	Chr10	2233698	2233730	32
Deletion	Chr8	2421557	2421559	2
Deletion	Chr2	2766342	2766355	13	LOC_Os02g05660
Deletion	Chr1	3929820	3929830	10
Deletion	Chr11	5540213	5540214	1
Deletion	Chr3	6252983	6252987	4
Deletion	Chr5	6481585	6481586	1
Deletion	Chr5	8753870	8753876	6
Deletion	Chr1	9115496	9115497	1
Deletion	Chr5	10097204	10097225	21
Deletion	Chr1	10417208	10417219	11	LOC_Os01g18520
Deletion	Chr11	13685347	13685348	1
Deletion	Chr1	14419612	14419620	8	LOC_Os01g25450
Deletion	Chr11	14937244	14937246	2
Deletion	Chr10	16490895	16490899	4
Deletion	Chr10	19854509	19854524	15	LOC_Os10g37090
Deletion	Chr2	20365767	20365796	29
Deletion	Chr8	21154098	21154099	1
Deletion	Chr5	21597947	21597953	6
Deletion	Chr1	22196347	22196361	14
Deletion	Chr1	23423597	23423700	103
Deletion	Chr4	24345332	24345333	1
Deletion	Chr2	24865291	24865315	24
Deletion	Chr5	25727951	25727956	5	LOC_Os05g44220
Deletion	Chr6	25908738	25908739	1
Deletion	Chr2	33688821	33688843	22	LOC_Os02g54980
Deletion	Chr1	39614297	39614306	9	LOC_Os01g68140

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2961170	2961175	6
Insertion	Chr1	35770112	35770113	2
Insertion	Chr12	26894975	26894975	1
Insertion	Chr2	24146279	24146282	4
Insertion	Chr2	24235268	24235278	11
Insertion	Chr2	7763376	7763377	2
Insertion	Chr4	2305618	2305618	1
Insertion	Chr5	15011797	15011797	1
Insertion	Chr6	23500335	23500336	2
Insertion	Chr9	9132111	9132117	7

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	16919640	17353819

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3468692	Chr1	17353846
Translocation	Chr8	3468695	Chr1	17353849
Translocation	Chr8	10108691	Chr6	18097955	LOC_Os08g16490
Translocation	Chr4	16311351	Chr1	34334168
Translocation	Chr4	16363771	Chr1	23524840	LOC_Os04g27680
Translocation	Chr12	24178281	Chr3	29127918	2
Translocation	Chr12	24178282	Chr3	29130497	2

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