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Mutant Information

Mutant Name	FN-278 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-278 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1448524	A-G	HET	SPLICE_SITE_REGION
SBS	Chr1	18254458	C-T	HET	INTRON
SBS	Chr1	26418162	G-T	HOMO	INTERGENIC
SBS	Chr1	7106171	T-A	HET	INTRON
SBS	Chr1	7106173	T-A	HET	INTRON
SBS	Chr10	499474	C-A	HET	INTERGENIC
SBS	Chr11	1173029	C-T	HET	INTERGENIC
SBS	Chr11	1267401	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03360
SBS	Chr11	1267402	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g03360
SBS	Chr11	13143512	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22850
SBS	Chr11	13527008	G-A	HET	INTERGENIC
SBS	Chr11	16347208	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28400
SBS	Chr11	20494484	T-A	HET	INTERGENIC
SBS	Chr11	3455944	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	17333924	C-T	HET	INTERGENIC
SBS	Chr12	19808219	A-G	HOMO	UTR_3_PRIME
SBS	Chr12	19808277	C-T	HOMO	UTR_3_PRIME
SBS	Chr12	25170572	G-A	HET	INTRON
SBS	Chr2	13945668	G-C	HET	INTERGENIC
SBS	Chr2	4203124	C-T	HET	INTERGENIC
SBS	Chr2	7608222	G-A	HOMO	INTERGENIC
SBS	Chr2	8047764	C-T	HET	INTRON
SBS	Chr3	17954274	G-T	HOMO	INTERGENIC
SBS	Chr3	25296654	C-A	HET	INTERGENIC
SBS	Chr3	33686502	G-A	HOMO	INTRON
SBS	Chr4	12169523	T-A	HET	INTERGENIC
SBS	Chr4	7357479	T-C	HET	INTRON
SBS	Chr4	9617658	T-G	HET	INTERGENIC
SBS	Chr5	19521954	T-G	HET	INTERGENIC
SBS	Chr5	20228414	T-A	HET	INTRON
SBS	Chr5	241623	G-A	HET	STOP_GAINED	LOC_Os05g01410
SBS	Chr5	7292286	G-T	HET	INTERGENIC
SBS	Chr5	9823778	C-T	HET	INTRON
SBS	Chr6	11320121	C-T	HOMO	INTERGENIC
SBS	Chr6	17364850	G-A	HET	INTERGENIC
SBS	Chr6	20136991	G-A	HET	INTERGENIC
SBS	Chr6	27584608	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g45560
SBS	Chr6	29380150	G-T	HET	INTERGENIC
SBS	Chr6	3737863	A-G	HET	SPLICE_SITE_REGION
SBS	Chr7	2164815	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	18182441	A-G	HOMO	INTERGENIC
SBS	Chr8	21650572	T-C	HOMO	INTERGENIC
SBS	Chr8	27746761	C-T	HOMO	INTERGENIC
SBS	Chr8	5787131	C-T	HET	INTERGENIC
SBS	Chr8	6083102	G-A	HET	INTERGENIC
SBS	Chr9	2208603	T-C	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	499527	499569	42
Deletion	Chr9	1566118	1566119	1
Deletion	Chr9	1852685	1852693	8
Deletion	Chr9	2382261	2382262	1	LOC_Os09g04470
Deletion	Chr5	5371300	5371308	8
Deletion	Chr5	6599677	6599680	3
Deletion	Chr11	7591046	7592956	1910
Deletion	Chr2	7608197	7608215	18
Deletion	Chr6	11198889	11198895	6
Deletion	Chr12	13406645	13406670	25
Deletion	Chr7	13898461	13898463	2
Deletion	Chr6	16413237	16413242	5	LOC_Os06g28820
Deletion	Chr11	17818688	17818692	4
Deletion	Chr10	18320925	18320929	4
Deletion	Chr10	18991595	18991612	17
Deletion	Chr12	19808560	19808562	2
Deletion	Chr11	20295803	20295804	1
Deletion	Chr5	22547964	22547968	4
Deletion	Chr3	23061188	23061202	14
Deletion	Chr1	23730951	23731403	452	LOC_Os01g41870
Deletion	Chr5	24362226	24362227	1
Deletion	Chr1	25800579	25800580	1
Deletion	Chr7	29192113	29192117	4
Deletion	Chr1	29851215	29851216	1
Deletion	Chr1	29990673	29990682	9
Deletion	Chr4	34909982	34909992	10	LOC_Os04g58710

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11743742	11743745	4
Insertion	Chr11	23208034	23208036	3
Insertion	Chr11	3710388	3710389	2
Insertion	Chr2	18298484	18298489	6
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr3	29291431	29291432	2
Insertion	Chr8	5657557	5657560	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	22124987	22161483	2
Inversion	Chr10	22125001	22161486	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr7	7356401	Chr1	39678865
Translocation	Chr11	9031430	Chr7	23098259
Translocation	Chr11	9031545	Chr7	23098251
Translocation	Chr12	10171784	Chr2	17608408
Translocation	Chr6	24301539	Chr2	25044490

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