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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26890903	A-T	HOMO	INTRON
SBS	Chr1	29573238	T-C	HET	INTRON
SBS	Chr1	32877970	G-T	HET	UTR_3_PRIME
SBS	Chr1	32877971	C-T	HET	UTR_3_PRIME
SBS	Chr1	32971142	C-A	HET	INTRON
SBS	Chr1	32971143	T-A	HET	INTRON
SBS	Chr1	41129440	C-T	HOMO	INTERGENIC
SBS	Chr10	14650975	T-C	HET	INTERGENIC
SBS	Chr10	17518130	C-T	HET	INTERGENIC
SBS	Chr10	18644280	G-A	HET	INTERGENIC
SBS	Chr10	22754221	C-T	HET	START_GAINED	LOC_Os10g42250
SBS	Chr10	4217907	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g07574
SBS	Chr10	4779901	G-A	HET	INTRON
SBS	Chr11	4811654	C-A	HET	INTRON
SBS	Chr2	25935044	T-A	HET	INTERGENIC
SBS	Chr2	28248407	C-A	HET	INTERGENIC
SBS	Chr2	7933905	C-T	HET	INTERGENIC
SBS	Chr3	20468485	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g36890
SBS	Chr3	28843336	C-G	HET	INTRON
SBS	Chr3	35633215	A-G	HET	INTERGENIC
SBS	Chr3	9105288	G-A	HET	INTERGENIC
SBS	Chr4	17074289	T-C	HOMO	INTERGENIC
SBS	Chr4	1857780	A-G	HOMO	INTERGENIC
SBS	Chr4	19097501	A-G	HOMO	INTERGENIC
SBS	Chr4	22264568	G-T	HET	INTERGENIC
SBS	Chr5	1285772	C-T	HET	INTERGENIC
SBS	Chr6	2580015	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	9675605	T-C	HET	INTERGENIC
SBS	Chr7	19007593	A-T	HET	INTERGENIC
SBS	Chr8	20125684	C-T	HOMO	INTERGENIC
SBS	Chr9	18191703	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	18194137	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29920
SBS	Chr9	1923851	A-T	HET	INTERGENIC
SBS	Chr9	21596362	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g37446
SBS	Chr9	9898663	C-T	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2576576	2576577	1
Deletion	Chr11	4173414	4173424	10
Deletion	Chr7	7069742	7069747	5
Deletion	Chr12	7459405	7459423	18
Deletion	Chr2	7945548	7945557	9
Deletion	Chr12	15612020	15612023	3
Deletion	Chr4	15810971	15810979	8
Deletion	Chr4	21621523	21621532	9
Deletion	Chr12	22445069	22445088	19
Deletion	Chr8	24985938	24985939	1
Deletion	Chr5	28229283	28229284	1
Deletion	Chr6	28485803	28485814	11
Deletion	Chr3	30416296	30416297	1
Deletion	Chr1	31878385	31878386	1
Deletion	Chr3	33692914	33692919	5
Deletion	Chr2	33786352	33786354	2	LOC_Os02g55150
Deletion	Chr4	34299923	34299924	1	LOC_Os04g57630
Deletion	Chr2	34397709	34397714	5
Deletion	Chr1	40420582	40420601	19

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18409844	18409845	2
Insertion	Chr1	23572413	23572414	2
Insertion	Chr1	38599018	38599033	16
Insertion	Chr1	42965165	42965166	2
Insertion	Chr1	4915293	4915294	2
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr3	11684668	11684671	4
Insertion	Chr5	29609065	29609065	1
Insertion	Chr5	4809099	4809101	3
Insertion	Chr6	12843205	12843206	2
Insertion	Chr6	23545576	23545578	3
Insertion	Chr9	10486654	10486655	2

No Inversion

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9544628	Chr4	12757392	LOC_Os09g15639
Translocation	Chr9	9746730	Chr4	1012802	LOC_Os09g15950
Translocation	Chr9	18188815	Chr5	16959731	LOC_Os05g28930
Translocation	Chr9	18188817	Chr1	5623793
Translocation	Chr9	18195003	Chr1	5623808
Translocation	Chr9	18195006	Chr5	16959741	LOC_Os05g28930
Translocation	Chr11	18291043	Chr8	15196565
Translocation	Chr8	19838638	Chr6	7023925
Translocation	Chr7	23767471	Chr3	25304104	LOC_Os07g39650
Translocation	Chr7	24498027	Chr1	2784232	LOC_Os01g05820

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