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Mutant Information |
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Mutant Name | FN-28 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-28 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 12
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 27226771 | A-G | Homo | INTRON | |
SBS | Chr1 | 33553174 | T-G | Homo | INTERGENIC | |
SBS | Chr3 | 19722629 | G-T | HET | INTERGENIC | |
SBS | Chr4 | 1288663 | C-T | Homo | INTERGENIC | |
SBS | Chr4 | 19590370 | T-A | Homo | INTERGENIC | |
SBS | Chr5 | 3044027 | C-T | Homo | INTERGENIC | |
SBS | Chr6 | 14704933 | C-T | Homo | UTR_5_PRIME | |
SBS | Chr6 | 20471221 | T-A | Homo | INTERGENIC | |
SBS | Chr7 | 20371896 | T-A | Homo | INTERGENIC | |
SBS | Chr8 | 16754396 | G-A | Homo | INTERGENIC | |
SBS | Chr10 | 713871 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 12763680 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g22240 |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 967730 | 967757 | 27 | |
Deletion | Chr10 | 2484314 | 2484321 | 7 | |
Deletion | Chr11 | 3571906 | 3571909 | 3 | |
Deletion | Chr6 | 9268196 | 9268222 | 26 | |
Deletion | Chr6 | 11014860 | 11014862 | 2 | LOC_Os06g19360 |
Deletion | Chr4 | 11607898 | 11607902 | 4 | |
Deletion | Chr9 | 13499001 | 13517000 | 18000 | 2 |
Deletion | Chr2 | 15323419 | 15323421 | 2 | |
Deletion | Chr2 | 17804877 | 17804889 | 12 | |
Deletion | Chr9 | 22071896 | 22071897 | 1 | |
Deletion | Chr1 | 22950277 | 22950278 | 1 | |
Deletion | Chr5 | 25314765 | 25314772 | 7 | LOC_Os05g43540 |
Deletion | Chr2 | 27316252 | 27316254 | 2 | LOC_Os02g45054 |
Deletion | Chr3 | 32342489 | 32342491 | 2 | LOC_Os03g56770 |
Deletion | Chr2 | 32704331 | 32704337 | 6 | LOC_Os02g53450 |
Deletion | Chr2 | 34891065 | 34891068 | 3 | LOC_Os02g56920 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 14702394 | 14702394 | 1 | |
Insertion | Chr7 | 3237844 | 3237845 | 2 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 17039428 | 18228145 |
No Translocation