Search Nipponbare

Mutant Information

Mutant Name	FN-28 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-28 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 12

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27226771	A-G	Homo	INTRON
SBS	Chr1	33553174	T-G	Homo	INTERGENIC
SBS	Chr10	713871	G-A	Homo	INTERGENIC
SBS	Chr11	12763680	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g22240
SBS	Chr3	19722629	G-T	HET	INTERGENIC
SBS	Chr4	1288663	C-T	Homo	INTERGENIC
SBS	Chr4	19590370	T-A	Homo	INTERGENIC
SBS	Chr5	3044027	C-T	Homo	INTERGENIC
SBS	Chr6	14704933	C-T	Homo	UTR_5_PRIME
SBS	Chr6	20471221	T-A	Homo	INTERGENIC
SBS	Chr7	20371896	T-A	Homo	INTERGENIC
SBS	Chr8	16754396	G-A	Homo	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	967730	967757	27
Deletion	Chr10	2484314	2484321	7
Deletion	Chr11	3571906	3571909	3
Deletion	Chr6	9268196	9268222	26
Deletion	Chr6	11014860	11014862	2	LOC_Os06g19360
Deletion	Chr4	11607898	11607902	4
Deletion	Chr9	13499001	13517000	18000	2
Deletion	Chr2	15323419	15323421	2
Deletion	Chr2	17804877	17804889	12
Deletion	Chr9	22071896	22071897	1
Deletion	Chr1	22950277	22950278	1
Deletion	Chr5	25314765	25314772	7	LOC_Os05g43540
Deletion	Chr2	27316252	27316254	2	LOC_Os02g45054
Deletion	Chr3	32342489	32342491	2	LOC_Os03g56770
Deletion	Chr2	32704331	32704337	6	LOC_Os02g53450
Deletion	Chr2	34891065	34891068	3	LOC_Os02g56920

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	14702394	14702394	1
Insertion	Chr7	3237844	3237845	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	17039428	18228145

No Translocation