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Mutant Information

Mutant Name	FN-281 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-281 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10896279	C-T	HET	INTRON
SBS	Chr1	14846713	C-T	HET	INTERGENIC
SBS	Chr1	20682027	T-C	HOMO	INTRON
SBS	Chr1	24900146	C-A	HET	INTRON
SBS	Chr1	41157499	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g71106
SBS	Chr1	493054	G-A	HET	INTERGENIC
SBS	Chr1	493055	G-A	HET	INTERGENIC
SBS	Chr1	5174596	T-A	HET	INTERGENIC
SBS	Chr11	21247129	T-A	HET	INTERGENIC
SBS	Chr12	10141008	C-T	HET	INTERGENIC
SBS	Chr12	22246635	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36330
SBS	Chr2	26257654	C-T	HET	INTERGENIC
SBS	Chr2	28501472	T-A	HET	INTERGENIC
SBS	Chr2	3562564	G-A	HET	INTERGENIC
SBS	Chr3	11933779	G-T	HET	INTERGENIC
SBS	Chr3	12020620	G-A	HET	INTRON
SBS	Chr3	15495240	T-A	HET	INTERGENIC
SBS	Chr3	17438769	C-T	HET	UTR_3_PRIME
SBS	Chr3	24937269	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44360
SBS	Chr3	27255212	A-T	HET	INTRON
SBS	Chr3	35210359	T-C	HET	INTRON
SBS	Chr4	17645433	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g29650
SBS	Chr4	24228385	T-C	HOMO	INTERGENIC
SBS	Chr4	35384625	C-A	HET	UTR_3_PRIME
SBS	Chr5	17761251	C-A	HET	INTERGENIC
SBS	Chr5	21921896	A-G	HET	INTERGENIC
SBS	Chr5	483047	C-T	HET	INTERGENIC
SBS	Chr6	19267263	C-T	HET	INTERGENIC
SBS	Chr6	20206778	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr6	3481468	C-T	HET	INTERGENIC
SBS	Chr6	7341541	A-G	HET	INTERGENIC
SBS	Chr7	2458484	T-G	HOMO	UTR_3_PRIME
SBS	Chr7	24786351	C-T	HET	INTERGENIC
SBS	Chr8	12133727	A-T	HET	INTRON
SBS	Chr8	15523497	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	2101536	T-G	HET	INTERGENIC
SBS	Chr9	11090714	G-A	HET	INTERGENIC
SBS	Chr9	1334781	T-C	HET	INTRON
SBS	Chr9	15917548	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26350
SBS	Chr9	15917554	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26350
SBS	Chr9	18930572	C-T	HET	INTERGENIC
SBS	Chr9	4229133	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08160
SBS	Chr9	9039859	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15010

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1708547	1708552	5	LOC_Os05g03840
Deletion	Chr1	5403245	5403252	7
Deletion	Chr3	6058062	6058066	4
Deletion	Chr9	9238251	9238254	3	LOC_Os09g15220
Deletion	Chr8	10452271	10452273	2
Deletion	Chr10	10767712	10767717	5
Deletion	Chr11	11116746	11116750	4
Deletion	Chr8	12076851	12076854	3
Deletion	Chr5	13567123	13567126	3
Deletion	Chr1	13619936	13619942	6
Deletion	Chr4	18630688	18630691	3
Deletion	Chr9	20242200	20242201	1
Deletion	Chr8	20982481	20982493	12
Deletion	Chr7	24175331	24175332	1	LOC_Os07g40310
Deletion	Chr8	24407571	24407588	17
Deletion	Chr2	24880567	24880575	8
Deletion	Chr1	29443377	29443378	1
Deletion	Chr3	29810001	29821000	11000
Deletion	Chr3	31114619	31114667	48
Deletion	Chr1	32945413	32945414	1	LOC_Os01g57030

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1946332	1946333	2
Insertion	Chr10	19526014	19526014	1
Insertion	Chr5	18832874	18832875	2
Insertion	Chr6	23530241	23530242	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12053224	12520677	LOC_Os04g22100
Inversion	Chr2	20313474	20917314	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8929372	Chr3	6177641	LOC_Os06g15740
Translocation	Chr12	16035776	Chr11	10835836
Translocation	Chr11	17697754	Chr5	22429731
Translocation	Chr11	22020946	Chr6	8627587	LOC_Os11g37290
Translocation	Chr5	24311296	Chr4	14242312
Translocation	Chr8	27513544	Chr3	2010397	LOC_Os08g43500
Translocation	Chr8	27514089	Chr3	2007342
Translocation	Chr6	31242972	Chr4	32540367	2

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