Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25310024	A-G	HOMO	INTERGENIC
SBS	Chr1	32529276	T-C	HET	INTERGENIC
SBS	Chr1	36910778	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63640
SBS	Chr10	10322625	G-C	HOMO	UTR_5_PRIME
SBS	Chr10	16782870	G-A	HET	INTERGENIC
SBS	Chr10	21551806	G-T	HOMO	INTERGENIC
SBS	Chr10	58524	C-A	HET	INTERGENIC
SBS	Chr11	22326368	G-A	HET	INTERGENIC
SBS	Chr11	8226727	C-A	HET	INTRON
SBS	Chr12	6573556	C-T	HET	INTERGENIC
SBS	Chr2	14305086	A-G	HET	INTERGENIC
SBS	Chr2	14305087	A-T	HET	INTERGENIC
SBS	Chr2	15203667	A-G	HET	INTERGENIC
SBS	Chr2	18425232	G-C	HET	INTERGENIC
SBS	Chr2	19868282	A-G	HET	UTR_3_PRIME
SBS	Chr2	21309215	C-T	HET	INTERGENIC
SBS	Chr3	15212263	A-G	HET	INTERGENIC
SBS	Chr3	20440412	C-T	HET	INTERGENIC
SBS	Chr4	13103088	C-T	HET	INTERGENIC
SBS	Chr4	18341758	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g30690
SBS	Chr4	19163657	C-A	HET	INTERGENIC
SBS	Chr4	24805511	G-A	HOMO	INTERGENIC
SBS	Chr4	29007134	G-A	HOMO	INTERGENIC
SBS	Chr5	16840511	G-T	HOMO	INTERGENIC
SBS	Chr5	19589215	C-T	HET	SPLICE_SITE_REGION
SBS	Chr5	7587233	G-A	HOMO	INTERGENIC
SBS	Chr5	8519185	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	15204840	A-C	HET	INTERGENIC
SBS	Chr6	24313365	T-C	HOMO	INTRON
SBS	Chr6	30085261	G-A	HET	INTERGENIC
SBS	Chr6	8256876	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g14680
SBS	Chr6	8587358	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15150
SBS	Chr7	17258358	G-A	HET	INTRON
SBS	Chr7	21964961	A-G	HET	INTERGENIC
SBS	Chr7	22999709	T-A	HET	INTRON
SBS	Chr7	28267326	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47284
SBS	Chr7	28267328	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47284
SBS	Chr7	4683870	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g09000
SBS	Chr8	13901771	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	7525166	T-A	HOMO	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1912043	1912044	1
Deletion	Chr6	3468380	3468399	19
Deletion	Chr4	5330440	5330449	9
Deletion	Chr12	6865152	6865156	4
Deletion	Chr4	11029158	11029161	3
Deletion	Chr8	11135826	11135837	11
Deletion	Chr3	14090980	14090986	6
Deletion	Chr2	15203594	15203613	19
Deletion	Chr7	15435839	15435872	33	LOC_Os07g26710
Deletion	Chr11	15612169	15612170	1
Deletion	Chr5	18613374	18613380	6
Deletion	Chr4	20618992	20618993	1
Deletion	Chr2	20655871	20655876	5
Deletion	Chr7	25509557	25509572	15
Deletion	Chr2	26196953	26196963	10
Deletion	Chr2	26329439	26329446	7	LOC_Os02g43630
Deletion	Chr8	27107151	27107450	299	LOC_Os08g42870
Deletion	Chr3	27539470	27539474	4

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19824972	19824989	18	LOC_Os01g35789
Insertion	Chr10	9640700	9640700	1
Insertion	Chr11	26037933	26037934	2
Insertion	Chr11	4818876	4818879	4
Insertion	Chr5	6316576	6316581	6
Insertion	Chr6	24610240	24610241	2
Insertion	Chr6	29446738	29446738	1	LOC_Os06g48680
Insertion	Chr7	8787925	8787926	2
Insertion	Chr8	13065608	13065608	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13577920	13578030	LOC_Os04g23739

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	369047	Chr1	42745749
Translocation	Chr2	17593638	Chr1	17520919	2
Translocation	Chr11	17927409	Chr8	6186086
Translocation	Chr10	23044153	Chr3	32469661
Translocation	Chr8	25167693	Chr2	5772853

Main menu