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Mutant Information

Mutant NameFN-284 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN-284 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 20
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr103230269C-THETSYNONYMOUS_CODING
SBSChr1111500907C-THOMOINTERGENIC
SBSChr1213734501G-THETINTERGENIC
SBSChr210718357T-CHETINTERGENIC
SBSChr216574387G-AHOMOINTERGENIC
SBSChr218662985C-GHOMOINTERGENIC
SBSChr229368572G-CHETINTERGENIC
SBSChr313374013G-CHETINTERGENIC
SBSChr34873071G-THOMOINTERGENIC
SBSChr34873072G-THOMOINTERGENIC
SBSChr516883429T-CHETINTERGENIC
SBSChr526663033C-THETINTERGENIC
SBSChr526663034A-THETINTERGENIC
SBSChr529286749A-CHETUTR_5_PRIME
SBSChr616322937A-CHETNON_SYNONYMOUS_CODINGLOC_Os06g28660
SBSChr716536956A-THETINTERGENIC
SBSChr822725266A-GHETINTERGENIC
SBSChr919572444A-THETNON_SYNONYMOUS_CODINGLOC_Os09g32820
SBSChr919941348G-AHETINTERGENIC
SBSChr922652097T-GHETINTERGENIC

Deletions: 19
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr89146249146251
DeletionChr4129962612996326LOC_Os04g03120
DeletionChr4244180924418101
DeletionChr12414037441403828
DeletionChr1419410641941148
DeletionChr775040668147914643848108
DeletionChr12812165881216635LOC_Os12g14270
DeletionChr513190564131905695
DeletionChr513190568131905735
DeletionChr1148835441488356016
DeletionChr7170183761701839620
DeletionChr717019366170193704
DeletionChr517359483173594874
DeletionChr6204480012056500011700015
DeletionChr821215211212152209
DeletionChr4225107482251077729
DeletionChr526339971263399732
DeletionChr5276260012763700011000LOC_Os05g48200
DeletionChr229888715298887161

Insertions: 2
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr218219646182196549LOC_Os02g30610image
InsertionChr9786173778617382

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr3942800524348546LOC_Os03g43580
InversionChr21279618213360333LOC_Os02g22370
InversionChr21279619713360343LOC_Os02g22370
InversionChr121338014520669130
InversionChr21362674513703684

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr64196609Chr111494122
TranslocationChr95559373Chr156899272
TranslocationChr812109570Chr29635651
TranslocationChr821850189Chr346949922