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| Mutant Information |
|---|
| Mutant Name | FN-284 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-284 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 3230269 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 11500907 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 13734501 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 10718357 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 16574387 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 18662985 | C-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 29368572 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 13374013 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 4873071 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 4873072 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 16883429 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 26663033 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 26663034 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 29286749 | A-C | HET | UTR_5_PRIME | |
| SBS | Chr6 | 16322937 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g28660 |
| SBS | Chr7 | 16536956 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 22725266 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 19572444 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g32820 |
| SBS | Chr9 | 19941348 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 22652097 | T-G | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 914624 | 914625 | 1 | |
| Deletion | Chr4 | 1299626 | 1299632 | 6 | LOC_Os04g03120 |
| Deletion | Chr4 | 2441809 | 2441810 | 1 | |
| Deletion | Chr12 | 4140374 | 4140382 | 8 | |
| Deletion | Chr1 | 4194106 | 4194114 | 8 | |
| Deletion | Chr7 | 7504066 | 8147914 | 643848 | 108 |
| Deletion | Chr12 | 8121658 | 8121663 | 5 | LOC_Os12g14270 |
| Deletion | Chr5 | 13190564 | 13190569 | 5 | |
| Deletion | Chr5 | 13190568 | 13190573 | 5 | |
| Deletion | Chr1 | 14883544 | 14883560 | 16 | |
| Deletion | Chr7 | 17018376 | 17018396 | 20 | |
| Deletion | Chr7 | 17019366 | 17019370 | 4 | |
| Deletion | Chr5 | 17359483 | 17359487 | 4 | |
| Deletion | Chr6 | 20448001 | 20565000 | 117000 | 15 |
| Deletion | Chr8 | 21215211 | 21215220 | 9 | |
| Deletion | Chr4 | 22510748 | 22510777 | 29 | |
| Deletion | Chr5 | 26339971 | 26339973 | 2 | |
| Deletion | Chr5 | 27626001 | 27637000 | 11000 | LOC_Os05g48200 |
| Deletion | Chr2 | 29888715 | 29888716 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 18219646 | 18219654 | 9 | LOC_Os02g30610 |
| Insertion | Chr9 | 7861737 | 7861738 | 2 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 9428005 | 24348546 | LOC_Os03g43580 |
| Inversion | Chr2 | 12796182 | 13360333 | LOC_Os02g22370 |
| Inversion | Chr2 | 12796197 | 13360343 | LOC_Os02g22370 |
| Inversion | Chr12 | 13380145 | 20669130 | |
| Inversion | Chr2 | 13626745 | 13703684 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 4196609 | Chr1 | 11494122 | |
| Translocation | Chr9 | 5559373 | Chr1 | 5689927 | 2 |
| Translocation | Chr8 | 12109570 | Chr2 | 9635651 | |
| Translocation | Chr8 | 21850189 | Chr3 | 4694992 | 2 |