Search Results

Mutant Information

Mutant Name	FN-285 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-285 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5995170	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	9854004	T-A	HET	INTERGENIC
SBS	Chr1	10353457	A-G	HET	INTERGENIC
SBS	Chr1	19626536	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35470
SBS	Chr1	19732101	G-A	HET	INTERGENIC
SBS	Chr2	1061210	G-A	HET	INTERGENIC
SBS	Chr2	5849460	A-T	HET	INTERGENIC
SBS	Chr2	16825524	G-C	HET	INTERGENIC
SBS	Chr3	11123219	A-T	HET	INTERGENIC
SBS	Chr3	22835565	C-T	HET	INTERGENIC
SBS	Chr3	27187522	C-T	HET	INTERGENIC
SBS	Chr3	32505176	A-G	HET	INTERGENIC
SBS	Chr4	1898942	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	1898943	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g04120
SBS	Chr4	3652828	C-T	HOMO	INTERGENIC
SBS	Chr4	12999371	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	13945823	T-A	HOMO	INTERGENIC
SBS	Chr4	26293214	C-T	HOMO	INTERGENIC
SBS	Chr5	3464686	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	5108442	A-G	HOMO	INTERGENIC
SBS	Chr5	14100901	C-T	HET	INTERGENIC
SBS	Chr5	24956525	G-A	HET	INTERGENIC
SBS	Chr6	3211331	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g06802
SBS	Chr6	4231545	A-T	HOMO	INTRON
SBS	Chr6	4231547	C-T	HOMO	INTRON
SBS	Chr6	5806232	G-C	HET	INTERGENIC
SBS	Chr6	13912873	C-T	HOMO	INTERGENIC
SBS	Chr6	22677815	C-T	HOMO	INTERGENIC
SBS	Chr6	27181758	G-A	HOMO	INTERGENIC
SBS	Chr7	11431290	G-T	HET	INTERGENIC
SBS	Chr7	13372117	T-C	HET	INTRON
SBS	Chr8	8459255	C-T	HOMO	INTERGENIC
SBS	Chr8	12527366	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20885
SBS	Chr8	12527367	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	17998071	A-G	HET	INTERGENIC
SBS	Chr8	24366231	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g38520
SBS	Chr8	28210739	T-C	HOMO	INTRON
SBS	Chr9	4886230	A-G	HOMO	INTRON
SBS	Chr9	9715581	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g15900
SBS	Chr9	22612979	C-A	HOMO	INTRON
SBS	Chr10	8909688	C-T	HET	INTRON
SBS	Chr10	14217615	T-A	HET	INTERGENIC
SBS	Chr10	22172091	G-A	HET	INTERGENIC
SBS	Chr11	9316026	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g16790
SBS	Chr11	11507591	C-T	HET	INTERGENIC
SBS	Chr12	7240381	A-T	HET	INTERGENIC
SBS	Chr12	8168331	G-T	HET	INTERGENIC
SBS	Chr12	9030948	A-C	HET	INTRON
SBS	Chr12	23398587	T-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3472089	3472090	1
Deletion	Chr8	5322559	5322560	1
Deletion	Chr9	5715890	5715894	4
Deletion	Chr10	7587379	7587761	382	LOC_Os10g13960
Deletion	Chr10	9771652	9771656	4
Deletion	Chr9	10162636	10162637	1
Deletion	Chr1	10519510	10519715	205
Deletion	Chr5	13923906	13923907	1
Deletion	Chr4	15925789	15925822	33
Deletion	Chr12	19203001	19293000	90000	12
Deletion	Chr12	19329789	19331584	1795
Deletion	Chr10	20547868	20547881	13
Deletion	Chr10	21213257	21213259	2
Deletion	Chr8	23120735	23120737	2
Deletion	Chr6	23369879	23369882	3
Deletion	Chr1	26046516	26046525	9
Deletion	Chr5	27216114	27216118	4
Deletion	Chr3	30459727	30459733	6
Deletion	Chr2	31471843	31471844	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	747275	747275	1
Insertion	Chr9	137023	137023	1
Insertion	Chr7	28046621	28046623	3
Insertion	Chr1	43056653	43056658	6
Insertion	Chr1	24753524	24753527	4
Insertion	Chr8	16317113	16317114	2
Insertion	Chr4	31319265	31319265	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6464509	6582886	LOC_Os07g11680
Inversion	Chr7	6464523	6590997	LOC_Os07g11680
Inversion	Chr8	10639698	12370844
Inversion	Chr12	17301429	17353201
Inversion	Chr12	19203013	19331578	LOC_Os12g31880
Inversion	Chr12	19292538	19329801

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	626736	Chr3	10900074
Translocation	Chr6	2697702	Chr4	12290573	2
Translocation	Chr12	6974539	Chr3	32355814	LOC_Os12g12650
Translocation	Chr7	7943960	Chr4	15897491	2
Translocation	Chr7	7945347	Chr2	29101787
Translocation	Chr4	15896538	Chr2	29101839
Translocation	Chr12	19540469	Chr4	617125	LOC_Os12g32380
Translocation	Chr12	19540609	Chr4	616702	LOC_Os12g32380

Main menu

You are here

Search Results