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Mutant Information

Mutant Name	FN-286 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-286 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18604199	G-T	HET	INTRON
SBS	Chr1	29344350	G-C	HOMO	INTERGENIC
SBS	Chr2	8897862	A-T	HET	INTERGENIC
SBS	Chr2	12541382	T-C	HET	INTERGENIC
SBS	Chr2	14720712	G-A	HOMO	INTERGENIC
SBS	Chr2	24209135	G-A	HOMO	INTERGENIC
SBS	Chr3	7538188	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g13900
SBS	Chr3	7575351	A-G	HET	SYNONYMOUS_CODING
SBS	Chr3	10116466	T-C	HOMO	INTRON
SBS	Chr3	24947108	G-T	HOMO	INTRON
SBS	Chr4	3065288	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05920
SBS	Chr4	17891636	T-A	HOMO	INTERGENIC
SBS	Chr4	34299351	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57630
SBS	Chr6	740118	T-A	HET	INTERGENIC
SBS	Chr6	2641670	C-G	HET	INTERGENIC
SBS	Chr6	2641675	A-G	HET	INTERGENIC
SBS	Chr6	2641730	C-T	HET	INTERGENIC
SBS	Chr6	8212931	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g14590
SBS	Chr6	14631535	G-A	HET	INTERGENIC
SBS	Chr6	16917794	T-A	HET	INTERGENIC
SBS	Chr7	7246061	G-A	HOMO	INTERGENIC
SBS	Chr7	7246062	C-A	HOMO	INTERGENIC
SBS	Chr7	7489049	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g13060
SBS	Chr7	12632332	G-A	HOMO	INTERGENIC
SBS	Chr8	762992	T-C	HET	INTERGENIC
SBS	Chr8	1960548	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g04040
SBS	Chr8	4865902	A-T	HET	INTERGENIC
SBS	Chr8	5194750	G-A	HET	INTERGENIC
SBS	Chr8	8758122	G-T	HET	INTERGENIC
SBS	Chr8	15782821	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	17404983	G-C	HET	INTERGENIC
SBS	Chr9	10142720	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16530
SBS	Chr9	16236388	T-C	HET	INTERGENIC
SBS	Chr9	20416189	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g35530
SBS	Chr9	20416190	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	5175326	T-A	HET	INTERGENIC
SBS	Chr10	12826766	C-T	HET	INTERGENIC
SBS	Chr11	3837905	G-A	HET	INTERGENIC
SBS	Chr11	9925905	G-A	HET	INTRON
SBS	Chr11	20050670	G-A	HOMO	INTERGENIC
SBS	Chr12	8405468	T-C	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3923439	3923451	12	LOC_Os03g07720
Deletion	Chr6	8670528	8670530	2	LOC_Os06g15270
Deletion	Chr6	10369296	10369300	4
Deletion	Chr5	14527858	14686300	158442	20
Deletion	Chr8	14751127	14751139	12
Deletion	Chr5	15852001	15947000	95000	15
Deletion	Chr1	16994090	16994100	10
Deletion	Chr4	17470967	17470977	10
Deletion	Chr12	20258653	20258681	28
Deletion	Chr4	20597153	20597159	6
Deletion	Chr1	25227281	25227301	20	LOC_Os01g44040
Deletion	Chr11	25501820	25501821	1	LOC_Os11g42370
Deletion	Chr4	27112384	27112388	4
Deletion	Chr4	28077068	28077069	1
Deletion	Chr3	30448772	30448773	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	311092	311093	2	LOC_Os05g01520
Insertion	Chr1	11768578	11768579	2
Insertion	Chr10	21194276	21194277	2
Insertion	Chr2	18552323	18552324	2
Insertion	Chr2	4243567	4243567	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14527867	15946933
Inversion	Chr3	17100532	17689027

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1617611	Chr2	17963769
Translocation	Chr8	11004433	Chr2	12773187	LOC_Os08g17940
Translocation	Chr8	11004435	Chr2	12772733	LOC_Os08g17940
Translocation	Chr6	11438075	Chr4	742435
Translocation	Chr5	28283080	Chr4	31297402

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