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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2314789	G-T	HET	INTERGENIC
SBS	Chr1	26453043	C-T	HET	INTERGENIC
SBS	Chr1	42191959	C-T	HET	SPLICE_SITE_REGION
SBS	Chr10	22761855	T-A	HET	INTERGENIC
SBS	Chr10	3308685	C-G	HOMO	INTERGENIC
SBS	Chr12	14334991	G-C	HET	INTRON
SBS	Chr12	21720080	C-T	HET	INTERGENIC
SBS	Chr12	27342272	A-T	HET	SYNONYMOUS_CODING
SBS	Chr2	18897204	T-C	HET	INTERGENIC
SBS	Chr4	10813531	T-C	HET	INTERGENIC
SBS	Chr4	15181030	C-T	HET	INTERGENIC
SBS	Chr4	20231394	T-C	HET	INTERGENIC
SBS	Chr4	20839093	C-G	HET	INTERGENIC
SBS	Chr4	35072679	A-G	HET	SPLICE_SITE_REGION
SBS	Chr5	10870428	C-T	HET	INTERGENIC
SBS	Chr5	11732895	T-G	HET	INTERGENIC
SBS	Chr6	26808461	C-T	HET	STOP_GAINED	LOC_Os06g44410
SBS	Chr6	31240342	C-A	HET	INTERGENIC
SBS	Chr7	15406621	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g26690
SBS	Chr7	25442415	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr7	9507318	C-T	HET	INTERGENIC
SBS	Chr8	17393358	G-A	HET	INTERGENIC
SBS	Chr8	19987271	T-A	HOMO	INTRON
SBS	Chr8	7186570	G-T	HET	INTERGENIC
SBS	Chr8	9614142	C-T	HET	INTRON
SBS	Chr9	14090338	T-C	HET	INTERGENIC
SBS	Chr9	8241336	G-T	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1516828	1516833	5
Deletion	Chr4	5208878	5208882	4
Deletion	Chr11	7479481	7479483	2
Deletion	Chr10	8220741	8220742	1	LOC_Os10g16480
Deletion	Chr3	9169307	9169331	24	LOC_Os03g16610
Deletion	Chr12	9839380	9839398	18	LOC_Os12g17180
Deletion	Chr9	10327343	10327352	9
Deletion	Chr1	10912205	10912210	5
Deletion	Chr3	11745001	11803000	58000	10
Deletion	Chr8	11783791	11783797	6
Deletion	Chr8	11970048	11970078	30	LOC_Os08g19990
Deletion	Chr5	12990457	12990459	2	LOC_Os05g22870
Deletion	Chr7	14048357	14048375	18
Deletion	Chr2	15721186	15721187	1
Deletion	Chr2	17229679	17233864	4185
Deletion	Chr8	19995140	19995141	1
Deletion	Chr10	20244139	20244143	4
Deletion	Chr5	20968531	20968537	6
Deletion	Chr5	22318440	22318444	4
Deletion	Chr12	23849938	23849949	11
Deletion	Chr8	24517393	24517394	1
Deletion	Chr1	24648094	24648105	11
Deletion	Chr6	25158104	25158108	4
Deletion	Chr7	26260465	26261052	587	LOC_Os07g43940
Deletion	Chr5	26388197	26388211	14
Deletion	Chr6	28223311	28223316	5
Deletion	Chr1	41060027	41060040	13

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2743564	2743566	3
Insertion	Chr1	30576706	30576707	2
Insertion	Chr1	42302619	42302631	13
Insertion	Chr1	4897757	4897758	2
Insertion	Chr10	2478261	2478262	2
Insertion	Chr11	1623145	1623146	2
Insertion	Chr11	18804838	18804841	4
Insertion	Chr7	1186731	1186740	10
Insertion	Chr7	7205751	7205752	2
Insertion	Chr9	15134259	15134261	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11581189	11745311	LOC_Os03g20750
Inversion	Chr3	11802618	12071040	LOC_Os03g21160
Inversion	Chr2	18482608	26850073
Inversion	Chr11	24900190	24900496	LOC_Os11g41520

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3002781	Chr10	13764672
Translocation	Chr3	3395198	Chr2	18103409
Translocation	Chr5	6371170	Chr4	16079080
Translocation	Chr8	8880197	Chr2	17229760	LOC_Os08g14770
Translocation	Chr8	8880198	Chr6	25131047	LOC_Os08g14770
Translocation	Chr8	8905206	Chr6	25130870	LOC_Os08g14810
Translocation	Chr11	16229028	Chr5	22549539
Translocation	Chr7	22081746	Chr2	2430845
Translocation	Chr7	26260469	Chr6	5342297	LOC_Os07g43940
Translocation	Chr7	26261029	Chr6	5070946	LOC_Os07g43940

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	12071036	12071036	0	LOC_Os03g21160

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