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Mutant Information

Mutant Name	FN-29 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-29 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9908463	C-T	Homo	INTERGENIC
SBS	Chr1	22243358	A-T	Homo	INTERGENIC
SBS	Chr2	34461224	C-A	Homo	INTERGENIC
SBS	Chr6	29200626	A-C	Homo	INTERGENIC
SBS	Chr8	22313713	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g35390
SBS	Chr12	27195886	A-G	Homo	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	576323	577224	901	LOC_Os02g02050
Deletion	Chr3	4560572	4560582	10
Deletion	Chr3	5372946	5372950	4
Deletion	Chr3	5697553	5697571	18
Deletion	Chr11	8029100	8029104	4
Deletion	Chr6	8086110	8086117	7
Deletion	Chr9	11413032	11413033	1
Deletion	Chr4	13027815	13027825	10
Deletion	Chr4	15522968	15522978	10	LOC_Os04g26610
Deletion	Chr4	16401001	16505000	104000	17
Deletion	Chr5	18194204	18194212	8
Deletion	Chr10	18452465	18452479	14	LOC_Os10g34614
Deletion	Chr5	19078408	19078410	2
Deletion	Chr9	21358818	21358819	1
Deletion	Chr6	30980801	30980803	2	LOC_Os06g51200

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22223380	22223383	4
Insertion	Chr2	17454917	17454918	2	LOC_Os02g29380
Insertion	Chr10	15808107	15808107	1
Insertion	Chr9	15985036	15985036	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16207854	16266457	LOC_Os04g27420
Inversion	Chr7	17716297	17788256	LOC_Os07g30150
Inversion	Chr12	23471444	23496604	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	8660496	Chr2	577225	LOC_Os02g02050
Translocation	Chr8	8660509	Chr2	576337	LOC_Os02g02050