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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11242848	G-A	HOMO	INTERGENIC
SBS	Chr1	14618445	C-A	HET	INTERGENIC
SBS	Chr1	36926814	C-T	HET	INTERGENIC
SBS	Chr1	38204143	A-C	HET	INTERGENIC
SBS	Chr11	15340981	G-A	HET	INTERGENIC
SBS	Chr11	25165647	C-T	HET	INTERGENIC
SBS	Chr12	24696565	G-C	HOMO	INTERGENIC
SBS	Chr12	25736482	G-C	HET	INTERGENIC
SBS	Chr12	5511171	G-T	HET	INTRON
SBS	Chr2	10564645	G-T	HOMO	INTERGENIC
SBS	Chr2	27250184	T-A	HOMO	UTR_3_PRIME
SBS	Chr2	28850949	A-G	HOMO	INTERGENIC
SBS	Chr2	32005638	T-C	HET	INTERGENIC
SBS	Chr2	34553784	C-G	HET	INTERGENIC
SBS	Chr2	4811068	C-G	HOMO	INTRON
SBS	Chr3	16739583	C-T	HET	INTERGENIC
SBS	Chr3	22537409	C-G	HET	INTERGENIC
SBS	Chr3	5230178	T-A	HET	INTERGENIC
SBS	Chr3	6578024	A-G	HET	INTRON
SBS	Chr4	15375698	T-G	HET	INTERGENIC
SBS	Chr4	8845046	G-A	HET	INTERGENIC
SBS	Chr5	15602732	G-T	HET	INTERGENIC
SBS	Chr5	15602733	T-G	HET	INTERGENIC
SBS	Chr5	15602735	G-T	HET	INTERGENIC
SBS	Chr5	28825478	C-T	HET	INTERGENIC
SBS	Chr5	296785	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g01500
SBS	Chr7	2573155	G-A	HET	INTERGENIC
SBS	Chr8	12549010	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20952
SBS	Chr8	13595264	C-T	HET	INTERGENIC
SBS	Chr8	6331188	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g10770
SBS	Chr8	8400718	C-T	HET	INTERGENIC
SBS	Chr8	9479711	G-T	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	587125	587131	6
Deletion	Chr5	1262996	1262997	1
Deletion	Chr9	2714143	2714144	1
Deletion	Chr6	2957241	2957243	2	LOC_Os06g06350
Deletion	Chr5	3717406	3717409	3
Deletion	Chr11	5570839	5570841	2	LOC_Os11g10260
Deletion	Chr8	8396276	8396281	5
Deletion	Chr11	13200163	13200171	8	LOC_Os11g22960
Deletion	Chr1	16024552	16024577	25
Deletion	Chr12	17832852	17832853	1
Deletion	Chr3	21184001	21432000	248000	41
Deletion	Chr11	23416660	23416673	13	LOC_Os11g39330
Deletion	Chr7	23806402	23806411	9
Deletion	Chr12	25940393	25940425	32
Deletion	Chr7	27009775	27009777	2
Deletion	Chr2	30024628	30024631	3
Deletion	Chr2	31281158	31281160	2	LOC_Os02g51119
Deletion	Chr2	31333575	31333578	3	LOC_Os02g51200
Deletion	Chr3	31709001	31724000	15000	LOC_Os03g55704
Deletion	Chr3	32064134	32064136	2
Deletion	Chr1	42020001	42244000	224000	32

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2713653	2713654	2
Insertion	Chr1	37654897	37654898	2
Insertion	Chr3	30016613	30016613	1
Insertion	Chr5	5992211	5992214	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12458229	15047120
Inversion	Chr11	17201500	20397027	LOC_Os11g34820
Inversion	Chr1	41846894	42019554	LOC_Os01g72150
Inversion	Chr1	41846938	42243948	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4466665	Chr3	21232064	2
Translocation	Chr10	10928861	Chr7	15046864
Translocation	Chr10	11009945	Chr7	12458226
Translocation	Chr12	13392781	Chr7	12441392
Translocation	Chr11	15401594	Chr10	3537148
Translocation	Chr5	22048732	Chr2	32190495
Translocation	Chr12	24683728	Chr2	5772738

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