Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-293 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-293 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 36339905 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 13677628 | C-A | HET | INTRON | |
| SBS | Chr10 | 16271613 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 17938026 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 18049345 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 18049346 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 18320891 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 19357174 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g36210 |
| SBS | Chr10 | 5795956 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 992736 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 14934727 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 26093835 | C-A | HOMO | UTR_3_PRIME | |
| SBS | Chr12 | 26093836 | C-A | HOMO | UTR_3_PRIME | |
| SBS | Chr3 | 22751975 | T-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 30482308 | A-C | HOMO | INTRON | |
| SBS | Chr3 | 5427093 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 16730447 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 19003543 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 21989519 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr4 | 23391208 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 6163045 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 29880447 | A-T | HET | INTRON | |
| SBS | Chr7 | 14971800 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g26090 |
| SBS | Chr7 | 16548461 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 870122 | C-T | HET | INTRON | |
| SBS | Chr8 | 21065675 | T-G | HET | INTERGENIC | |
| SBS | Chr8 | 26115569 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 1921121 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 5181539 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 9343191 | A-G | HET | INTERGENIC |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1920138 | 1920146 | 8 | |
| Deletion | Chr10 | 2976001 | 3009000 | 33000 | 6 |
| Deletion | Chr5 | 6181001 | 6227000 | 46000 | 6 |
| Deletion | Chr7 | 15884800 | 15884804 | 4 | |
| Deletion | Chr12 | 15967595 | 15967604 | 9 | LOC_Os12g27210 |
| Deletion | Chr4 | 17437001 | 17500000 | 63000 | 7 |
| Deletion | Chr10 | 21472555 | 21472571 | 16 | LOC_Os10g40100 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 18705944 | 18705944 | 1 | |
| Insertion | Chr5 | 6514541 | 6514541 | 1 | |
| Insertion | Chr6 | 6877139 | 6877139 | 1 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 9834982 | 12703402 | |
| Inversion | Chr7 | 9835022 | 12703403 | |
| Inversion | Chr9 | 16312992 | 16356411 | |
| Inversion | Chr4 | 17437113 | 18776776 | LOC_Os04g29350 |
| Inversion | Chr4 | 17499973 | 18776807 | |
| Inversion | Chr11 | 20645059 | 20889504 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 6181287 | Chr3 | 22392995 | LOC_Os05g11030 |
| Translocation | Chr3 | 22392736 | Chr1 | 42830416 | LOC_Os01g73920 |