Search Results
| Mutant Information |
|---|
| Mutant Name | FN-294 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-294 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 219665 | C-T | HET | INTRON | |
| SBS | Chr1 | 6641284 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 15670153 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 23876649 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 27405717 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 337310 | A-T | HET | INTRON | |
| SBS | Chr3 | 13038365 | C-T | HET | INTRON | |
| SBS | Chr3 | 19053631 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 16643252 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 18329895 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 8654875 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 12247988 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 12278089 | T-G | HET | INTERGENIC | |
| SBS | Chr5 | 29886601 | T-A | HOMO | INTRON | |
| SBS | Chr6 | 16381346 | A-G | HET | INTRON | |
| SBS | Chr6 | 23376334 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 28188200 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 5074754 | T-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 8049933 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g13540 |
| SBS | Chr8 | 11184368 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 22714848 | T-G | HET | INTRON | |
| SBS | Chr10 | 15479332 | C-G | HET | INTERGENIC | |
| SBS | Chr10 | 22120816 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 22120817 | T-A | HET | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1081543 | 1081551 | 8 | |
| Deletion | Chr4 | 3213730 | 3213734 | 4 | LOC_Os04g06180 |
| Deletion | Chr2 | 8941166 | 8941170 | 4 | LOC_Os02g15820 |
| Deletion | Chr9 | 9294316 | 9294317 | 1 | |
| Deletion | Chr10 | 10418530 | 10418531 | 1 | |
| Deletion | Chr11 | 15630039 | 15646985 | 16946 | LOC_Os11g27170 |
| Deletion | Chr10 | 18436741 | 18436742 | 1 | LOC_Os10g34580 |
| Deletion | Chr9 | 21226928 | 21226929 | 1 | |
| Deletion | Chr11 | 21915681 | 21915682 | 1 | |
| Deletion | Chr7 | 22449872 | 22449893 | 21 | |
| Deletion | Chr6 | 22497618 | 22497621 | 3 | |
| Deletion | Chr3 | 23176217 | 23176220 | 3 | LOC_Os03g41710 |
| Deletion | Chr6 | 23279255 | 23279259 | 4 | |
| Deletion | Chr2 | 23734623 | 23734663 | 40 | |
| Deletion | Chr5 | 27217181 | 27217202 | 21 | LOC_Os05g47500 |
| Deletion | Chr3 | 28046105 | 28046110 | 5 | LOC_Os03g49250 |
| Deletion | Chr3 | 28360001 | 28488000 | 128000 | 16 |
| Deletion | Chr4 | 30109642 | 30109645 | 3 | |
| Deletion | Chr1 | 36986427 | 36986430 | 3 |
Insertions: 5
Inversions: 12
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 2927902 | 3252011 | 2 |
| Inversion | Chr9 | 3254627 | 3380845 | |
| Inversion | Chr8 | 7578674 | 8677274 | |
| Inversion | Chr8 | 7578694 | 8677272 | |
| Inversion | Chr2 | 15149579 | 15207978 | |
| Inversion | Chr2 | 15149844 | 15207985 | |
| Inversion | Chr5 | 18801257 | 18934942 | LOC_Os05g32230 |
| Inversion | Chr5 | 18801269 | 18934948 | LOC_Os05g32230 |
| Inversion | Chr3 | 23248586 | 23318779 | LOC_Os03g41960 |
| Inversion | Chr3 | 23248859 | 28488124 | LOC_Os03g41870 |
| Inversion | Chr1 | 34545920 | 35829287 | |
| Inversion | Chr1 | 34545934 | 35829281 |
No Translocation