Search Results
| Mutant Information |
|---|
| Mutant Name | FN-296 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-296 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 18
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11436125 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 22209076 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 12820408 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 5184951 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 35421346 | C-G | HET | INTERGENIC | |
| SBS | Chr5 | 1271151 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 4793300 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 14069197 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 14069198 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 23507918 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 10146362 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 29446010 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 29506023 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 303376 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 3946803 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 15526604 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g26560 |
| SBS | Chr12 | 20997080 | A-C | HET | INTERGENIC | |
| SBS | Chr12 | 27446979 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g44280 |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 574724 | 574733 | 9 | |
| Deletion | Chr5 | 1317001 | 1344000 | 27000 | 5 |
| Deletion | Chr3 | 1450592 | 1450595 | 3 | |
| Deletion | Chr2 | 1860522 | 1860523 | 1 | |
| Deletion | Chr6 | 3051550 | 3051551 | 1 | |
| Deletion | Chr6 | 3764218 | 3764219 | 1 | |
| Deletion | Chr4 | 8301438 | 8301444 | 6 | |
| Deletion | Chr2 | 10074660 | 10074661 | 1 | LOC_Os02g17500 |
| Deletion | Chr5 | 11158608 | 11158620 | 12 | |
| Deletion | Chr2 | 12878280 | 12878294 | 14 | |
| Deletion | Chr9 | 12935322 | 12935324 | 2 | |
| Deletion | Chr3 | 14048647 | 14048649 | 2 | |
| Deletion | Chr8 | 15566736 | 15566754 | 18 | |
| Deletion | Chr5 | 17520171 | 17520173 | 2 | |
| Deletion | Chr7 | 18985393 | 18985436 | 43 | |
| Deletion | Chr4 | 22213656 | 22213657 | 1 | LOC_Os04g36790 |
| Deletion | Chr1 | 23332001 | 23453000 | 121000 | 20 |
| Deletion | Chr1 | 23455001 | 23677000 | 222000 | 40 |
| Deletion | Chr12 | 25620373 | 25620392 | 19 | |
| Deletion | Chr5 | 28930497 | 28930503 | 6 | |
| Deletion | Chr3 | 34645390 | 34645392 | 2 | |
| Deletion | Chr1 | 35615376 | 35615377 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 16895887 | 16895887 | 1 | |
| Insertion | Chr12 | 23490639 | 23490640 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4203230 | Chr7 | 14061894 | LOC_Os07g24720 |