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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	165465	T-C	HET	INTERGENIC
SBS	Chr1	5578348	C-T	HET	INTERGENIC
SBS	Chr1	9204877	G-T	HET	INTRON
SBS	Chr1	9204878	T-A	HET	INTRON
SBS	Chr1	13589995	T-C	HET	INTERGENIC
SBS	Chr1	31453662	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	17259792	C-A	HOMO	INTRON
SBS	Chr2	18764492	A-T	HET	INTERGENIC
SBS	Chr2	21857249	G-A	HET	INTRON
SBS	Chr2	22634986	T-A	HOMO	INTERGENIC
SBS	Chr2	26814832	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g44320
SBS	Chr3	9424727	T-C	HET	INTERGENIC
SBS	Chr3	11233292	G-T	HET	INTERGENIC
SBS	Chr3	20454514	C-A	HET	SYNONYMOUS_CODING
SBS	Chr3	23416705	T-A	HET	INTERGENIC
SBS	Chr3	24361482	A-T	HET	INTERGENIC
SBS	Chr3	27820646	C-T	HET	INTRON
SBS	Chr4	13993598	T-C	HOMO	INTRON
SBS	Chr4	14066027	A-T	HOMO	INTERGENIC
SBS	Chr4	17409938	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g29330
SBS	Chr4	22909708	A-T	HET	INTRON
SBS	Chr4	25061859	C-A	HOMO	INTRON
SBS	Chr4	30233694	A-G	HOMO	INTERGENIC
SBS	Chr4	32201254	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g54020
SBS	Chr5	1133433	G-A	HET	INTERGENIC
SBS	Chr6	25090465	G-A	HET	INTERGENIC
SBS	Chr7	1437986	G-C	HOMO	UTR_3_PRIME
SBS	Chr8	1797417	T-G	HOMO	INTRON
SBS	Chr8	18188950	G-A	HOMO	INTERGENIC
SBS	Chr9	12649926	C-A	HET	UTR_5_PRIME
SBS	Chr10	16300821	G-T	HOMO	INTERGENIC
SBS	Chr12	11263223	C-T	HOMO	INTRON
SBS	Chr12	11798988	G-T	HET	INTRON

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	163012	163017	5
Deletion	Chr6	267034	267039	5
Deletion	Chr11	8358648	8358649	1
Deletion	Chr8	8662001	8669000	7000	LOC_Os08g14440
Deletion	Chr5	9084001	9111000	27000	4
Deletion	Chr5	9123001	9221000	98000	13
Deletion	Chr11	13847404	13847421	17
Deletion	Chr6	19839649	19839656	7	LOC_Os06g34070
Deletion	Chr3	20635844	20635872	28
Deletion	Chr2	20674842	20674843	1
Deletion	Chr11	21394368	21394370	2
Deletion	Chr6	21602245	21602247	2
Deletion	Chr1	30860367	30860519	152
Deletion	Chr4	33126214	33126215	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	20295106	20295106	1	LOC_Os03g36600
Insertion	Chr2	34604720	34604727	8
Insertion	Chr2	14100393	14100394	2
Insertion	Chr2	1534643	1534643	1	LOC_Os02g03670

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8638504	8669045	LOC_Os08g14440

No Translocation

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