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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14079329	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24980
SBS	Chr1	16379617	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	22305861	C-A	HET	INTRON
SBS	Chr1	22860132	G-A	HET	INTERGENIC
SBS	Chr1	29303295	T-A	HET	INTERGENIC
SBS	Chr1	29303296	T-A	HET	INTERGENIC
SBS	Chr1	6501056	G-C	HET	UTR_3_PRIME
SBS	Chr10	12701075	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24700
SBS	Chr11	27111562	T-G	HOMO	INTERGENIC
SBS	Chr11	9942727	T-A	HET	INTERGENIC
SBS	Chr2	11385050	C-T	HOMO	INTERGENIC
SBS	Chr2	28399484	G-T	HOMO	INTERGENIC
SBS	Chr2	28827182	A-T	HOMO	INTRON
SBS	Chr3	15823492	G-T	HOMO	INTERGENIC
SBS	Chr3	15823493	C-T	HOMO	INTERGENIC
SBS	Chr3	17368123	C-T	HET	INTRON
SBS	Chr3	1838424	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	29400125	T-G	HET	INTRON
SBS	Chr3	33415093	C-T	HET	INTRON
SBS	Chr4	15325223	C-A	HOMO	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	19890914	G-T	HET	INTRON
SBS	Chr4	22876638	A-T	HET	INTERGENIC
SBS	Chr5	6635407	G-A	HET	INTERGENIC
SBS	Chr5	6635408	T-A	HET	INTERGENIC
SBS	Chr6	22335558	T-G	HOMO	INTERGENIC
SBS	Chr6	25778143	G-A	HOMO	INTERGENIC
SBS	Chr6	5672130	T-A	HOMO	INTERGENIC
SBS	Chr7	12794095	C-T	HET	INTERGENIC
SBS	Chr9	10997562	G-A	HET	INTRON
SBS	Chr9	9760900	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15970

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	155491	155497	6
Deletion	Chr3	636041	640386	4345	2
Deletion	Chr10	2800846	2800869	23
Deletion	Chr12	4021019	4021023	4
Deletion	Chr5	5450558	5450570	12
Deletion	Chr3	11367050	11367061	11
Deletion	Chr3	12955379	12955386	7
Deletion	Chr6	14606073	14606090	17
Deletion	Chr12	23181686	23181692	6
Deletion	Chr2	25032000	25032005	5
Deletion	Chr4	28728266	28728267	1
Deletion	Chr11	28974778	28974797	19

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	19432115	19571621	LOC_Os10g36370

No Translocation

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