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Mutant Information |
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Mutant Name | FN-3 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-3 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 5
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr3 | 27497932 | C-T | Homo | INTRON | |
SBS | Chr5 | 25704878 | G-T | Homo | INTERGENIC | |
SBS | Chr8 | 1816990 | G-A | Homo | SYNONYMOUS_CODING | |
SBS | Chr10 | 12213495 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 25041789 | C-T | Homo | SYNONYMOUS_CODING |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 575604 | 575605 | 1 | |
Deletion | Chr5 | 2231350 | 2231352 | 2 | |
Deletion | Chr1 | 5254270 | 5254288 | 18 | |
Deletion | Chr12 | 10422001 | 10584000 | 162000 | 23 |
Deletion | Chr7 | 10945873 | 10945876 | 3 | |
Deletion | Chr8 | 11034445 | 11034453 | 8 | |
Deletion | Chr7 | 13187712 | 13187713 | 1 | LOC_Os07g23400 |
Deletion | Chr5 | 16600424 | 16600430 | 6 | |
Deletion | Chr11 | 16936926 | 16938486 | 1560 | 2 |
Deletion | Chr12 | 20180213 | 20183718 | 3505 | 2 |
Deletion | Chr7 | 26988484 | 26988489 | 5 | |
Deletion | Chr3 | 27327322 | 27327328 | 6 | |
Deletion | Chr4 | 31014503 | 31014512 | 9 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 28034317 | 28034317 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr4 | 3440290 | 6460578 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 9105841 | Chr8 | 14047089 | |
Translocation | Chr12 | 20183710 | Chr4 | 6460557 | LOC_Os12g33380 |