Search Nipponbare

Mutant Information

Mutant Name	FN-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-3 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	12213495	G-A	Homo	INTERGENIC
SBS	Chr11	25041789	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	27497932	C-T	Homo	INTRON
SBS	Chr5	25704878	G-T	Homo	INTERGENIC
SBS	Chr8	1816990	G-A	Homo	SYNONYMOUS_CODING

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	575604	575605	1
Deletion	Chr5	2231350	2231352	2
Deletion	Chr1	5254270	5254288	18
Deletion	Chr12	10422001	10584000	162000	23
Deletion	Chr7	10945873	10945876	3
Deletion	Chr8	11034445	11034453	8
Deletion	Chr7	13187712	13187713	1	LOC_Os07g23400
Deletion	Chr5	16600424	16600430	6
Deletion	Chr11	16936926	16938486	1560	2
Deletion	Chr12	20180213	20183718	3505	2
Deletion	Chr7	26988484	26988489	5
Deletion	Chr3	27327322	27327328	6
Deletion	Chr4	31014503	31014512	9

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	28034317	28034317	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3440290	6460578

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9105841	Chr8	14047089
Translocation	Chr12	20183710	Chr4	6460557	LOC_Os12g33380