Search Results
| Mutant Information |
|---|
| Mutant Name | FN-30 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-30 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24695713 | T-C | Homo | INTRON | |
| SBS | Chr1 | 34055245 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g58920 |
| SBS | Chr1 | 34055246 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g58920 |
| SBS | Chr2 | 15182261 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 28418885 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 4794908 | T-C | Homo | INTRON | |
| SBS | Chr3 | 27917629 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 35423128 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 35423129 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1390369 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g03260 |
| SBS | Chr4 | 22390423 | C-T | Homo | INTRON | |
| SBS | Chr4 | 31431238 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 989974 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g02750 |
| SBS | Chr5 | 4362126 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24772807 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 29675802 | C-T | Homo | INTRON | |
| SBS | Chr7 | 8994596 | T-C | Homo | INTRON | |
| SBS | Chr7 | 22887466 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 24278356 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 15486591 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 15486593 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 16033820 | T-A | HET | INTRON | |
| SBS | Chr11 | 21493015 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 26336025 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g42370 |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 947186 | 947189 | 3 | |
| Deletion | Chr11 | 2926597 | 2926599 | 2 | LOC_Os11g06140 |
| Deletion | Chr1 | 6717736 | 6717737 | 1 | |
| Deletion | Chr6 | 8056138 | 8056140 | 2 | |
| Deletion | Chr9 | 8970001 | 9172000 | 202000 | 15 |
| Deletion | Chr4 | 10586346 | 10586347 | 1 | |
| Deletion | Chr12 | 16153889 | 16153893 | 4 | |
| Deletion | Chr7 | 16562965 | 16562981 | 16 | |
| Deletion | Chr4 | 18903112 | 18903114 | 2 | |
| Deletion | Chr11 | 20421576 | 20421579 | 3 | LOC_Os11g34850 |
| Deletion | Chr10 | 21603197 | 21603198 | 1 | |
| Deletion | Chr1 | 22113074 | 22113100 | 26 | |
| Deletion | Chr6 | 24787594 | 24787596 | 2 | |
| Deletion | Chr6 | 29507911 | 29507915 | 4 | |
| Deletion | Chr3 | 34026001 | 34210000 | 184000 | 39 |
| Deletion | Chr1 | 38631486 | 38631495 | 9 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 19118308 | 19118309 | 2 | |
| Insertion | Chr8 | 3079423 | 3079423 | 1 | LOC_Os08g05750 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 172664 | 20320414 | LOC_Os01g01350 |
| Inversion | Chr9 | 7514162 | 8961545 | LOC_Os09g13030 |
| Inversion | Chr9 | 9683750 | 11417482 | 2 |
| Inversion | Chr1 | 20256003 | 20320421 | |
| Inversion | Chr7 | 28329984 | 28985004 | LOC_Os07g47360 |
| Inversion | Chr7 | 28330020 | 28985004 | LOC_Os07g47360 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 21575715 | Chr6 | 20171402 | 2 |
| Translocation | Chr12 | 21575716 | Chr6 | 20169100 | LOC_Os12g35480 |