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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24695713	T-C	Homo	INTRON
SBS	Chr1	34055245	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	34055246	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr11	21493015	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	26336025	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g42370
SBS	Chr2	15182261	C-T	Homo	INTERGENIC
SBS	Chr2	28418885	A-G	Homo	INTERGENIC
SBS	Chr3	27917629	T-C	Homo	INTERGENIC
SBS	Chr3	35423128	A-C	Homo	INTERGENIC
SBS	Chr3	35423129	C-A	Homo	INTERGENIC
SBS	Chr3	4794908	T-C	Homo	INTRON
SBS	Chr4	1390369	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03260
SBS	Chr4	22390423	C-T	Homo	INTRON
SBS	Chr4	31431238	C-T	Homo	INTERGENIC
SBS	Chr5	4362126	C-T	Homo	INTERGENIC
SBS	Chr5	989974	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g02750
SBS	Chr6	24772807	G-A	Homo	INTERGENIC
SBS	Chr6	29675802	C-T	Homo	INTRON
SBS	Chr7	22887466	C-T	Homo	INTERGENIC
SBS	Chr7	24278356	A-G	Homo	INTERGENIC
SBS	Chr7	8994596	T-C	Homo	INTRON
SBS	Chr8	15486591	C-T	Homo	INTERGENIC
SBS	Chr8	15486593	A-T	Homo	INTERGENIC
SBS	Chr9	16033820	T-A	HET	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	947186	947189	3
Deletion	Chr11	2926597	2926599	2	LOC_Os11g06140
Deletion	Chr1	6717736	6717737	1
Deletion	Chr6	8056138	8056140	2
Deletion	Chr9	8970001	9172000	202000	15
Deletion	Chr4	10586346	10586347	1
Deletion	Chr12	16153889	16153893	4
Deletion	Chr7	16562965	16562981	16
Deletion	Chr4	18903112	18903114	2
Deletion	Chr11	20421576	20421579	3	LOC_Os11g34850
Deletion	Chr10	21603197	21603198	1
Deletion	Chr1	22113074	22113100	26
Deletion	Chr6	24787594	24787596	2
Deletion	Chr6	29507911	29507915	4
Deletion	Chr3	34026001	34210000	184000	39
Deletion	Chr1	38631486	38631495	9	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19118308	19118309	2
Insertion	Chr8	3079423	3079423	1	LOC_Os08g05750

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	172664	20320414	LOC_Os01g01350
Inversion	Chr9	7514162	8961545	LOC_Os09g13030
Inversion	Chr9	9683750	11417482	2
Inversion	Chr1	20256003	20320421
Inversion	Chr7	28329984	28985004	LOC_Os07g47360
Inversion	Chr7	28330020	28985004	LOC_Os07g47360

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	21575715	Chr6	20171402	2
Translocation	Chr12	21575716	Chr6	20169100	LOC_Os12g35480

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