Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-301 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-301 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15873160 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 18519552 | G-C | HET | INTERGENIC | |
| SBS | Chr1 | 33908145 | A-G | HET | INTRON | |
| SBS | Chr1 | 36292671 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 17517365 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 19236009 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 19237060 | G-A | HET | INTRON | |
| SBS | Chr11 | 26514158 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 4151811 | C-T | HET | INTRON | |
| SBS | Chr11 | 6400365 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 26339871 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 3629754 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g07070 |
| SBS | Chr3 | 10389022 | C-G | HET | INTRON | |
| SBS | Chr3 | 18638230 | A-C | HET | UTR_3_PRIME | |
| SBS | Chr4 | 16387152 | C-T | HET | INTRON | |
| SBS | Chr4 | 18167739 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 24289887 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 25527144 | G-A | HET | UTR_5_PRIME | |
| SBS | Chr4 | 28189761 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 1808785 | A-C | HET | UTR_3_PRIME | |
| SBS | Chr6 | 29931495 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr7 | 14855079 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g25860 |
| SBS | Chr7 | 1552529 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 21342301 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 27752972 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 8516587 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 10800739 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 5408034 | T-A | HET | INTERGENIC |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1686211 | 1686235 | 24 | |
| Deletion | Chr8 | 5715770 | 5715784 | 14 | LOC_Os08g09900 |
| Deletion | Chr5 | 5991987 | 5991988 | 1 | |
| Deletion | Chr6 | 6210163 | 6210170 | 7 | |
| Deletion | Chr5 | 8398705 | 8398706 | 1 | |
| Deletion | Chr8 | 10877988 | 10877998 | 10 | LOC_Os08g17760 |
| Deletion | Chr11 | 12637624 | 12637631 | 7 | |
| Deletion | Chr2 | 17363653 | 17363665 | 12 | |
| Deletion | Chr2 | 20479001 | 20518000 | 39000 | 5 |
| Deletion | Chr2 | 21308694 | 21308695 | 1 | |
| Deletion | Chr4 | 22919161 | 22919168 | 7 | LOC_Os04g38570 |
| Deletion | Chr11 | 25575162 | 25575166 | 4 | |
| Deletion | Chr12 | 26473817 | 26473818 | 1 | |
| Deletion | Chr5 | 28152388 | 28152434 | 46 | |
| Deletion | Chr1 | 28537026 | 28537027 | 1 | |
| Deletion | Chr1 | 39197105 | 39197112 | 7 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 11202356 | 11202356 | 1 | |
| Insertion | Chr4 | 6076981 | 6076981 | 1 | LOC_Os04g11180 |
| Insertion | Chr7 | 17244955 | 17244966 | 12 | LOC_Os07g29360 |
| Insertion | Chr7 | 5268745 | 5268746 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 20372277 | 20532741 |
No Translocation