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| Mutant Information |
|---|
| Mutant Name | FN-303 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-303 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21282209 | A-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 29673545 | C-T | HET | INTRON | |
| SBS | Chr1 | 33898523 | A-C | HOMO | INTRON | |
| SBS | Chr10 | 16702407 | G-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 18754414 | C-G | HET | INTERGENIC | |
| SBS | Chr11 | 3885019 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 19222595 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 23530097 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 26021904 | A-T | HET | UTR_5_PRIME | |
| SBS | Chr12 | 26575150 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 5557011 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 675513 | T-A | HET | INTRON | |
| SBS | Chr2 | 1889442 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 13889151 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 11210330 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20120 |
| SBS | Chr4 | 19950274 | G-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 29948460 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g50192 |
| SBS | Chr4 | 7161098 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 22279345 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 11938275 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g20720 |
| SBS | Chr6 | 24903354 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 6894587 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 21977348 | G-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 28150360 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 12407156 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 12882057 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 13598347 | C-T | HOMO | INTRON |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1428486 | 1428492 | 6 | |
| Deletion | Chr2 | 4726191 | 4732442 | 6251 | LOC_Os02g09210 |
| Deletion | Chr1 | 8841340 | 8841342 | 2 | LOC_Os01g15720 |
| Deletion | Chr2 | 10713947 | 10713954 | 7 | |
| Deletion | Chr3 | 11590947 | 11590956 | 9 | |
| Deletion | Chr6 | 12209563 | 12209568 | 5 | |
| Deletion | Chr3 | 15999265 | 15999276 | 11 | |
| Deletion | Chr1 | 17813001 | 17897000 | 84000 | 14 |
| Deletion | Chr9 | 18040260 | 18045129 | 4869 | LOC_Os09g29670 |
| Deletion | Chr8 | 22798697 | 22798699 | 2 | |
| Deletion | Chr3 | 36334188 | 36334189 | 1 | |
| Deletion | Chr1 | 38428202 | 38434678 | 6476 | LOC_Os01g66150 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 10321690 | 10321690 | 1 | LOC_Os10g20480 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 9765352 | 10033425 | LOC_Os03g17570 |
| Inversion | Chr4 | 19627916 | 19878442 | LOC_Os04g32600 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 9033468 | Chr1 | 38434679 | |
| Translocation | Chr11 | 9033471 | Chr1 | 38428202 | |
| Translocation | Chr9 | 18040271 | Chr3 | 10033391 | |
| Translocation | Chr9 | 18045120 | Chr3 | 9765346 | 2 |