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| Mutant Information |
|---|
| Mutant Name | FN-305 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-305 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21224047 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 22752246 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 7228290 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 10919775 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g19140 |
| SBS | Chr11 | 10919776 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g19140 |
| SBS | Chr11 | 12935382 | G-A | HET | INTRON | |
| SBS | Chr11 | 13023698 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 14183016 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 18294066 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 1915309 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 20734722 | C-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 22361013 | G-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 10877060 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g18780 |
| SBS | Chr12 | 13764145 | T-A | HOMO | INTRON | |
| SBS | Chr12 | 14464052 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 15113878 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 23779575 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 3001467 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 4565197 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 4565205 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 7901600 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 17035047 | C-T | HET | INTRON | |
| SBS | Chr3 | 18923837 | C-G | HET | INTERGENIC | |
| SBS | Chr3 | 26057055 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 31047456 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 35811679 | C-T | HOMO | INTRON | |
| SBS | Chr3 | 7277624 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr4 | 15457824 | A-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 7650721 | G-A | HET | INTRON | |
| SBS | Chr6 | 11256057 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19710 |
| SBS | Chr6 | 17016216 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 22307570 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37660 |
| SBS | Chr6 | 31199284 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 3644793 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 8782152 | G-A | HET | INTRON | |
| SBS | Chr6 | 9907388 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 15972495 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 10814645 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 15971154 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 4103574 | G-C | HET | INTERGENIC |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 257308 | 257315 | 7 | |
| Deletion | Chr2 | 946647 | 946648 | 1 | |
| Deletion | Chr2 | 1365678 | 1365679 | 1 | |
| Deletion | Chr11 | 6062921 | 6062942 | 21 | |
| Deletion | Chr2 | 12512140 | 12512144 | 4 | |
| Deletion | Chr3 | 15525495 | 15525496 | 1 | |
| Deletion | Chr3 | 17801001 | 18477000 | 676000 | 87 |
| Deletion | Chr8 | 19237387 | 19237389 | 2 | |
| Deletion | Chr7 | 20743379 | 20743381 | 2 | |
| Deletion | Chr6 | 20946737 | 20946752 | 15 | |
| Deletion | Chr2 | 22711551 | 22711552 | 1 | LOC_Os02g37630 |
| Deletion | Chr8 | 24510304 | 24510311 | 7 | |
| Deletion | Chr5 | 25520512 | 25520513 | 1 | |
| Deletion | Chr1 | 25962894 | 25962899 | 5 | |
| Deletion | Chr6 | 28471289 | 28471304 | 15 | LOC_Os06g46920 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 28235462 | 28235462 | 1 |
Inversions: 9
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 10640278 | 11829880 | |
| Inversion | Chr7 | 12811660 | 14451861 | LOC_Os07g22720 |
| Inversion | Chr7 | 12819723 | 14451875 | |
| Inversion | Chr5 | 15535807 | 16012750 | LOC_Os05g26780 |
| Inversion | Chr5 | 15535823 | 16012752 | LOC_Os05g26780 |
| Inversion | Chr9 | 16266841 | 17464150 | |
| Inversion | Chr9 | 16345622 | 17464134 | |
| Inversion | Chr7 | 17576259 | 18130238 | |
| Inversion | Chr2 | 30049681 | 32027619 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 15534425 | Chr4 | 17874554 | LOC_Os04g29960 |
| Translocation | Chr10 | 21155204 | Chr3 | 19055130 | LOC_Os10g39570 |
| Translocation | Chr10 | 21155210 | Chr3 | 19052900 | 2 |
| Translocation | Chr7 | 26021634 | Chr6 | 10638036 | LOC_Os07g43470 |
| Translocation | Chr7 | 26021644 | Chr6 | 10640230 | LOC_Os07g43470 |