Search Results
| Mutant Information |
|---|
| Mutant Name | FN-306 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-306 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11196265 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 11196266 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 22287163 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 27265060 | G-A | HET | INTRON | |
| SBS | Chr1 | 34231321 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 36838973 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 1495919 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 2698904 | G-A | HET | INTRON | |
| SBS | Chr2 | 21022131 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 31686969 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 31686970 | T-A | HOMO | INTRON | |
| SBS | Chr3 | 1645870 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 9807902 | G-T | HET | INTRON | |
| SBS | Chr3 | 19317484 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 30377951 | C-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 35183383 | A-C | HOMO | UTR_3_PRIME | |
| SBS | Chr4 | 6213813 | A-G | HET | INTRON | |
| SBS | Chr4 | 24126661 | G-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 24639998 | C-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 5190180 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g09290 |
| SBS | Chr5 | 11372690 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 25534624 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 6329845 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 3356945 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 10964592 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 4258686 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 8303236 | C-A | HET | INTRON | |
| SBS | Chr8 | 17635884 | A-T | HET | INTRON | |
| SBS | Chr9 | 2901726 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 3040387 | G-C | HET | INTERGENIC | |
| SBS | Chr10 | 4015204 | T-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr10 | 12604490 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24560 |
| SBS | Chr10 | 21486934 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr12 | 8664179 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 12616955 | G-T | HET | INTRON | |
| SBS | Chr12 | 12671953 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g22440 |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 543499 | 543508 | 9 | |
| Deletion | Chr6 | 2503365 | 2503366 | 1 | |
| Deletion | Chr8 | 5366253 | 5366258 | 5 | LOC_Os08g09240 |
| Deletion | Chr11 | 5564012 | 5564015 | 3 | |
| Deletion | Chr7 | 7212812 | 7212814 | 2 | |
| Deletion | Chr3 | 9543939 | 9543950 | 11 | |
| Deletion | Chr7 | 14732963 | 14732964 | 1 | |
| Deletion | Chr7 | 14864245 | 14864254 | 9 | |
| Deletion | Chr1 | 17743808 | 17743809 | 1 | |
| Deletion | Chr2 | 18699573 | 18699596 | 23 | |
| Deletion | Chr10 | 20855975 | 20855977 | 2 | |
| Deletion | Chr2 | 21100815 | 21100818 | 3 | |
| Deletion | Chr12 | 24643039 | 24643044 | 5 | LOC_Os12g39870 |
| Deletion | Chr6 | 26795090 | 26795514 | 424 | |
| Deletion | Chr1 | 34201859 | 34201863 | 4 | LOC_Os01g59200 |
| Deletion | Chr1 | 38923415 | 38923427 | 12 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 14501956 | 14509556 | LOC_Os12g25220 |
| Inversion | Chr12 | 14501973 | 14509833 | |
| Inversion | Chr2 | 20457021 | 20733738 |
No Translocation