Search Results
| Mutant Information |
|---|
| Mutant Name | FN-307 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-307 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37814817 | G-A | HOMO | INTRON | |
| SBS | Chr2 | 11701402 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 7493384 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g13460 |
| SBS | Chr4 | 18994293 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 19204891 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 22054484 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 34096576 | C-T | HET | INTRON | |
| SBS | Chr5 | 2924670 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 3094406 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g06160 |
| SBS | Chr5 | 27602088 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 27602093 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 23741158 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 19043941 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 21374733 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 759081 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 5194750 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 9753069 | G-A | HET | INTRON | |
| SBS | Chr8 | 14122863 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 15646481 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 16522901 | A-G | HET | INTRON | |
| SBS | Chr9 | 8541611 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14450 |
| SBS | Chr9 | 19520743 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 21779364 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g37800 |
| SBS | Chr10 | 17917770 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr11 | 1880475 | C-T | HOMO | INTRON | |
| SBS | Chr11 | 16202128 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 16202129 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 15419977 | A-C | HET | INTERGENIC |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 6470079 | 6470080 | 1 | |
| Deletion | Chr9 | 9545369 | 9545370 | 1 | LOC_Os09g15639 |
| Deletion | Chr3 | 11198768 | 11198790 | 22 | |
| Deletion | Chr4 | 13113644 | 13113652 | 8 | |
| Deletion | Chr8 | 15646484 | 15646486 | 2 | |
| Deletion | Chr3 | 19105446 | 19105491 | 45 | |
| Deletion | Chr1 | 19427785 | 19427812 | 27 | LOC_Os01g35090 |
| Deletion | Chr2 | 20977056 | 20977057 | 1 | |
| Deletion | Chr3 | 23728117 | 23728128 | 11 | |
| Deletion | Chr7 | 23948380 | 23948400 | 20 | |
| Deletion | Chr2 | 24026646 | 24026656 | 10 | |
| Deletion | Chr2 | 24775138 | 24775144 | 6 | |
| Deletion | Chr3 | 25159001 | 25210000 | 51000 | 2 |
| Deletion | Chr2 | 25578387 | 25578388 | 1 | |
| Deletion | Chr4 | 27901372 | 27901379 | 7 | |
| Deletion | Chr3 | 35363080 | 35363087 | 7 | LOC_Os03g62430 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 25900257 | 25900258 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 9271794 | Chr2 | 10451444 | LOC_Os06g16280 |