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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25047343	T-C	HET	INTRON
SBS	Chr1	26648848	T-C	HET	INTERGENIC
SBS	Chr1	28921184	C-T	HET	INTERGENIC
SBS	Chr1	6474880	G-A	HOMO	INTRON
SBS	Chr10	6186666	G-A	HOMO	INTERGENIC
SBS	Chr11	10845900	C-T	HOMO	INTRON
SBS	Chr11	20360090	A-G	HET	INTRON
SBS	Chr11	27156697	C-A	HOMO	UTR_3_PRIME
SBS	Chr12	11778522	A-C	HET	INTERGENIC
SBS	Chr12	13109479	A-G	HET	INTERGENIC
SBS	Chr12	1930382	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04540
SBS	Chr12	21846817	A-G	HET	INTERGENIC
SBS	Chr12	23604133	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g38450
SBS	Chr2	26165090	G-A	HET	INTERGENIC
SBS	Chr2	9706054	T-A	HOMO	INTERGENIC
SBS	Chr3	14813558	T-A	HOMO	INTERGENIC
SBS	Chr3	21541500	G-C	HOMO	INTERGENIC
SBS	Chr3	2300717	C-T	HET	INTERGENIC
SBS	Chr6	21141552	G-A	HOMO	INTRON
SBS	Chr6	21141557	T-A	HOMO	INTRON
SBS	Chr7	24274175	C-A	HET	INTERGENIC
SBS	Chr8	26405194	T-G	HOMO	INTERGENIC
SBS	Chr9	19738446	C-T	HET	INTRON
SBS	Chr9	5658911	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	7218121	T-C	HET	INTERGENIC
SBS	Chr9	7969148	A-T	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1929061	1929941	880
Deletion	Chr9	2123623	2123624	1	LOC_Os09g04100
Deletion	Chr3	2610065	2610071	6	LOC_Os03g05340
Deletion	Chr2	2835073	2835079	6
Deletion	Chr1	14789862	14789864	2
Deletion	Chr12	21856086	21856110	24
Deletion	Chr10	21950781	21950800	19
Deletion	Chr8	27267001	27383000	116000	22
Deletion	Chr3	28636776	28636781	5
Deletion	Chr3	29252770	29252772	2
Deletion	Chr7	29504591	29504799	208
Deletion	Chr2	35643334	35643340	6	LOC_Os02g58230

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	25055851	25055851	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	75391	1944614	2
Inversion	Chr4	75429	1944695	2

No Translocation

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