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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25833569	C-A	HET	INTERGENIC
SBS	Chr11	1855759	G-A	HOMO	INTERGENIC
SBS	Chr11	20699147	C-T	HET	INTRON
SBS	Chr11	4520640	G-A	HOMO	INTERGENIC
SBS	Chr12	3979020	A-G	HOMO	INTERGENIC
SBS	Chr2	12109637	C-T	HOMO	INTRON
SBS	Chr2	1420592	G-A	HOMO	UTR_3_PRIME
SBS	Chr2	26806669	A-G	HET	INTERGENIC
SBS	Chr3	15800405	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	17954274	G-T	HOMO	INTERGENIC
SBS	Chr3	30581133	G-A	HET	INTRON
SBS	Chr3	32717424	G-A	HET	INTERGENIC
SBS	Chr3	32782764	G-T	HET	UTR_5_PRIME
SBS	Chr3	32854211	G-C	HET	INTERGENIC
SBS	Chr3	34525296	T-C	HET	INTRON
SBS	Chr4	11144074	C-T	HOMO	INTRON
SBS	Chr4	12581928	G-A	HOMO	INTERGENIC
SBS	Chr4	21699983	G-A	HOMO	UTR_3_PRIME
SBS	Chr4	25291110	G-A	HOMO	INTRON
SBS	Chr5	20545386	G-A	HET	INTRON
SBS	Chr5	4794379	C-T	HET	INTERGENIC
SBS	Chr6	14403192	T-C	HET	INTRON
SBS	Chr6	17364850	G-A	HOMO	INTERGENIC
SBS	Chr6	23516365	A-C	HET	INTERGENIC
SBS	Chr6	24377401	G-A	HET	INTERGENIC
SBS	Chr7	14314566	T-C	HOMO	INTERGENIC
SBS	Chr7	8476685	C-A	HET	INTERGENIC
SBS	Chr8	11818390	G-A	HET	INTERGENIC
SBS	Chr8	19207322	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31090
SBS	Chr8	27746761	C-T	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	578189	578205	16
Deletion	Chr2	2714446	2714447	1
Deletion	Chr12	4497091	4497092	1
Deletion	Chr8	10042164	10042170	6
Deletion	Chr4	11053841	11053853	12
Deletion	Chr4	12315242	12315243	1	LOC_Os04g21760
Deletion	Chr6	16072510	16072514	4	LOC_Os06g28300
Deletion	Chr8	19976740	19976770	30	LOC_Os08g32240
Deletion	Chr1	20246785	20246788	3
Deletion	Chr4	20419755	20419767	12
Deletion	Chr4	20430980	20430990	10
Deletion	Chr7	22135631	22135634	3
Deletion	Chr8	24489001	24494000	5000	LOC_Os08g38730
Deletion	Chr11	27185001	27265000	80000	13
Deletion	Chr11	27267001	27299000	32000	6
Deletion	Chr4	32041247	32041248	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1536712	1536713	2
Insertion	Chr11	20444435	20444435	1
Insertion	Chr9	13600953	13600967	15
Insertion	Chr9	7956104	7956107	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4304564	4312111	LOC_Os12g08500

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr3	3021093	Chr1	36462369
Translocation	Chr3	3021103	Chr1	36462370
Translocation	Chr8	24488997	Chr3	1412988

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