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Mutant Information

Mutant Name	FN-31 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-31 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 10

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	10416754	A-G	Homo	INTERGENIC
SBS	Chr2	13280741	A-G	HET	INTERGENIC
SBS	Chr2	23075091	T-C	Homo	INTERGENIC
SBS	Chr4	17542498	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g29530
SBS	Chr4	17542499	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	4890989	G-A	Homo	INTERGENIC
SBS	Chr9	4154764	G-A	Homo	INTERGENIC
SBS	Chr10	21371298	A-G	Homo	INTRON
SBS	Chr12	16443751	C-T	HET	INTRON
SBS	Chr12	26341743	G-A	Homo	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1681434	1681442	8	LOC_Os01g03930
Deletion	Chr6	7217001	7292000	75000	11
Deletion	Chr7	7402134	7402151	17
Deletion	Chr4	7500763	7500764	1
Deletion	Chr6	8099529	8099533	4	LOC_Os06g14440
Deletion	Chr3	8772116	8772120	4
Deletion	Chr1	9110056	9110057	1
Deletion	Chr4	15207847	15207885	38
Deletion	Chr3	16647414	16647415	1
Deletion	Chr6	17548454	17548455	1
Deletion	Chr4	19665411	19665422	11
Deletion	Chr3	25513777	25513783	6
Deletion	Chr5	27165878	27165893	15
Deletion	Chr3	29565431	29565434	3
Deletion	Chr2	29666726	29666727	1
Deletion	Chr1	29672414	29672429	15
Deletion	Chr3	31045318	31045339	21
Deletion	Chr3	33149814	33149817	3
Deletion	Chr4	34135742	34135748	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	757417	757418	2
Insertion	Chr10	11672467	11672467	1
Insertion	Chr12	26180459	26180459	1

No Inversion

No Translocation