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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30792050	A-G	HOMO	INTRON
SBS	Chr1	4501887	A-G	HOMO	INTRON
SBS	Chr10	9410137	C-T	HET	INTRON
SBS	Chr11	15180869	A-C	HET	INTERGENIC
SBS	Chr11	17431283	T-C	HET	INTERGENIC
SBS	Chr11	25663917	T-C	HET	INTERGENIC
SBS	Chr12	1525714	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g03750
SBS	Chr12	15943162	T-G	HOMO	INTERGENIC
SBS	Chr12	16021937	T-C	HET	INTERGENIC
SBS	Chr12	20323249	T-A	HOMO	INTERGENIC
SBS	Chr2	10290905	T-C	HOMO	INTERGENIC
SBS	Chr2	19588572	T-C	HOMO	INTERGENIC
SBS	Chr3	12559222	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g21960
SBS	Chr4	34704378	C-A	HOMO	INTRON
SBS	Chr5	12335641	C-T	HET	INTRON
SBS	Chr5	12335642	C-T	HET	INTRON
SBS	Chr5	15530102	G-T	HET	INTERGENIC
SBS	Chr5	17749594	C-T	HET	INTERGENIC
SBS	Chr5	18718652	G-T	HET	INTERGENIC
SBS	Chr5	20507801	C-T	HOMO	INTRON
SBS	Chr6	30905138	C-T	HET	INTRON
SBS	Chr8	16753794	C-A	HET	INTERGENIC
SBS	Chr8	8661702	A-G	HOMO	INTERGENIC
SBS	Chr8	8895585	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14790
SBS	Chr9	16884934	T-C	HOMO	INTRON
SBS	Chr9	17127071	G-A	HOMO	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1250261	1250263	2
Deletion	Chr3	1483920	1483921	1
Deletion	Chr12	4040434	4040440	6
Deletion	Chr4	5364201	5364206	5
Deletion	Chr6	6858367	6858369	2
Deletion	Chr12	13630031	13630032	1
Deletion	Chr1	13809490	13809491	1
Deletion	Chr2	17248756	17248761	5
Deletion	Chr6	17705173	17705190	17
Deletion	Chr5	20933436	20933438	2
Deletion	Chr8	24910265	24910268	3
Deletion	Chr7	26636340	26636346	6
Deletion	Chr4	27992758	27996879	4121	LOC_Os04g47140
Deletion	Chr4	34040350	34040352	2	LOC_Os04g57140

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	16811940	16811954	15

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	35267381	35517362	LOC_Os01g61420
Inversion	Chr1	35267394	35517383	LOC_Os01g61420

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3019777	Chr9	2127993	2

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