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| Mutant Information |
|---|
| Mutant Name | FN-311 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-311 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 33703095 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 12407415 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 11179822 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 13125119 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 26930537 | G-A | HET | INTRON | |
| SBS | Chr12 | 14414347 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 16719292 | G-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 10304419 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g17820 |
| SBS | Chr2 | 20255043 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 20357226 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 26392004 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 27124800 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 16633578 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 31027072 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 12349251 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 12349253 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 29845788 | C-G | HET | INTERGENIC | |
| SBS | Chr5 | 11659413 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 28678848 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 8631252 | C-G | HET | INTRON | |
| SBS | Chr5 | 9362693 | G-A | HET | INTRON | |
| SBS | Chr6 | 22410498 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 24048060 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 16353398 | A-G | HOMO | INTRON | |
| SBS | Chr9 | 14761009 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 8362256 | G-A | HET | INTERGENIC |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2164122 | 2164130 | 8 | LOC_Os12g04990 |
| Deletion | Chr2 | 3642001 | 3651000 | 9000 | 3 |
| Deletion | Chr9 | 8508109 | 8508113 | 4 | |
| Deletion | Chr11 | 9932331 | 9932334 | 3 | |
| Deletion | Chr11 | 14074573 | 14074583 | 10 | |
| Deletion | Chr11 | 14983226 | 14983240 | 14 | |
| Deletion | Chr12 | 19437606 | 19437614 | 8 | LOC_Os12g32200 |
| Deletion | Chr12 | 19638237 | 19638241 | 4 | |
| Deletion | Chr11 | 23756929 | 23756933 | 4 | |
| Deletion | Chr2 | 25922001 | 25976000 | 54000 | 9 |
| Deletion | Chr4 | 28257710 | 28257718 | 8 | |
| Deletion | Chr3 | 31052364 | 31052365 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 42926965 | 42926968 | 4 | |
| Insertion | Chr11 | 10073794 | 10073794 | 1 | |
| Insertion | Chr7 | 4274300 | 4274300 | 1 | |
| Insertion | Chr8 | 24134203 | 24134203 | 1 | LOC_Os08g38092 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 23484814 | Chr4 | 25916457 | |
| Translocation | Chr8 | 23485547 | Chr4 | 25916455 |