Search Nipponbare


Mutant Information

Mutant NameFN-312 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN-312 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
(Hover to Zoom-In)


Variant Information

Single base substitutions: 21
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr12841562C-THOMOSYNONYMOUS_CODING
SBSChr1012934534A-GHETINTERGENIC
SBSChr1018046186G-AHOMOINTERGENIC
SBSChr105619500C-THOMONON_SYNONYMOUS_CODINGLOC_Os10g10214
SBSChr106272445T-CHETINTERGENIC
SBSChr114555215G-AHETINTRON
SBSChr1224242495C-THOMOINTERGENIC
SBSChr124371711C-THETINTERGENIC
SBSChr21537019C-THETINTERGENIC
SBSChr232082078T-AHETINTRON
SBSChr233156154G-AHETINTERGENIC
SBSChr28100182C-THETINTERGENIC
SBSChr412752620C-THETINTERGENIC
SBSChr415502996G-AHETINTERGENIC
SBSChr427580468C-THETINTERGENIC
SBSChr429039405A-GHETINTERGENIC
SBSChr429039406C-THETINTERGENIC
SBSChr630145038C-THETINTERGENIC
SBSChr71065828A-GHOMOINTERGENIC
SBSChr728682163A-CHOMOINTERGENIC
SBSChr912081052T-CHOMOINTRON

Deletions: 14
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr46532686532768
DeletionChr108009118009121
DeletionChr112147521214753918
DeletionChr1488403648840393LOC_Os01g09550
DeletionChr11558933055893311
DeletionChr7619224561922527
DeletionChr611847141118471498LOC_Os06g20580
DeletionChr216345210163452111LOC_Os02g27592
DeletionChr218489826184898293
DeletionChr1217192642171928218
DeletionChr625213206252132137
DeletionChr529074293290742941
DeletionChr333889873338898796
DeletionChr3340842033408421310

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr113173853173851
InsertionChr420326665203266651
InsertionChr911628247116282471

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr62864420129620294LOC_Os06g47250
InversionChr62864454529620308LOC_Os06g47250

No Translocation