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Mutant Information |
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Mutant Name | FN-312 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-312 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 21
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 2841562 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr10 | 12934534 | A-G | HET | INTERGENIC | |
SBS | Chr10 | 18046186 | G-A | HOMO | INTERGENIC | |
SBS | Chr10 | 5619500 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g10214 |
SBS | Chr10 | 6272445 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 4555215 | G-A | HET | INTRON | |
SBS | Chr12 | 24242495 | C-T | HOMO | INTERGENIC | |
SBS | Chr12 | 4371711 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 1537019 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 32082078 | T-A | HET | INTRON | |
SBS | Chr2 | 33156154 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 8100182 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 12752620 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 15502996 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 27580468 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 29039405 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 29039406 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 30145038 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 1065828 | A-G | HOMO | INTERGENIC | |
SBS | Chr7 | 28682163 | A-C | HOMO | INTERGENIC | |
SBS | Chr9 | 12081052 | T-C | HOMO | INTRON |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 653268 | 653276 | 8 | |
Deletion | Chr10 | 800911 | 800912 | 1 | |
Deletion | Chr11 | 2147521 | 2147539 | 18 | |
Deletion | Chr1 | 4884036 | 4884039 | 3 | LOC_Os01g09550 |
Deletion | Chr11 | 5589330 | 5589331 | 1 | |
Deletion | Chr7 | 6192245 | 6192252 | 7 | |
Deletion | Chr6 | 11847141 | 11847149 | 8 | LOC_Os06g20580 |
Deletion | Chr2 | 16345210 | 16345211 | 1 | LOC_Os02g27592 |
Deletion | Chr2 | 18489826 | 18489829 | 3 | |
Deletion | Chr1 | 21719264 | 21719282 | 18 | |
Deletion | Chr6 | 25213206 | 25213213 | 7 | |
Deletion | Chr5 | 29074293 | 29074294 | 1 | |
Deletion | Chr3 | 33889873 | 33889879 | 6 | |
Deletion | Chr3 | 34084203 | 34084213 | 10 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 317385 | 317385 | 1 | |
Insertion | Chr4 | 20326665 | 20326665 | 1 | |
Insertion | Chr9 | 11628247 | 11628247 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 28644201 | 29620294 | LOC_Os06g47250 |
Inversion | Chr6 | 28644545 | 29620308 | LOC_Os06g47250 |
No Translocation