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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HET	INTRON
SBS	Chr1	18069097	A-G	HET	INTRON
SBS	Chr1	21500241	C-T	HOMO	INTERGENIC
SBS	Chr1	42964179	C-G	HOMO	INTRON
SBS	Chr1	42964180	T-A	HOMO	INTRON
SBS	Chr10	5036937	G-A	HET	INTERGENIC
SBS	Chr11	14673737	C-T	HET	INTRON
SBS	Chr11	16391886	G-T	HET	INTRON
SBS	Chr11	16391887	C-T	HET	INTRON
SBS	Chr12	11080359	T-A	HET	INTERGENIC
SBS	Chr2	1571789	A-T	HET	INTRON
SBS	Chr2	17659713	C-A	HET	INTRON
SBS	Chr2	21910163	T-G	HET	INTERGENIC
SBS	Chr3	1624679	G-T	HET	INTERGENIC
SBS	Chr3	26138862	C-T	HET	INTERGENIC
SBS	Chr4	13831933	T-A	HET	INTERGENIC
SBS	Chr4	16231383	A-G	HET	INTERGENIC
SBS	Chr4	1831211	G-A	HET	INTERGENIC
SBS	Chr4	28397743	G-A	HOMO	INTERGENIC
SBS	Chr4	28397744	G-C	HOMO	INTERGENIC
SBS	Chr5	10921136	C-A	HET	INTRON
SBS	Chr5	11042651	C-G	HET	UTR_5_PRIME
SBS	Chr5	15305393	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	26730642	G-C	HOMO	INTERGENIC
SBS	Chr7	19016635	C-G	HOMO	INTERGENIC
SBS	Chr7	869581	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g02490
SBS	Chr9	3902068	A-G	HET	INTERGENIC
SBS	Chr9	8830882	G-A	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1260622	1260623	1	LOC_Os06g03310
Deletion	Chr3	1502134	1502136	2	LOC_Os03g03470
Deletion	Chr12	1942855	1942867	12	LOC_Os12g04595
Deletion	Chr12	2025101	2025102	1
Deletion	Chr10	2194854	2194863	9
Deletion	Chr9	3902070	3902071	1
Deletion	Chr4	5681107	5681108	1
Deletion	Chr12	7219393	7219394	1	LOC_Os12g13020
Deletion	Chr8	7537230	7537231	1
Deletion	Chr12	8802165	8802174	9	LOC_Os12g15420
Deletion	Chr5	9430295	9430305	10
Deletion	Chr11	10978061	10978062	1	2
Deletion	Chr9	11805891	11805896	5	LOC_Os09g19734
Deletion	Chr4	13220953	13220959	6	LOC_Os04g23220
Deletion	Chr1	15127468	15127490	22
Deletion	Chr5	15760370	15760375	5
Deletion	Chr10	16007292	16007383	91
Deletion	Chr3	16062973	16062975	2
Deletion	Chr8	17394834	17394836	2
Deletion	Chr9	17716959	17716963	4
Deletion	Chr5	18966493	18966494	1
Deletion	Chr5	19710183	19710185	2
Deletion	Chr11	23173960	23173987	27	LOC_Os11g38920
Deletion	Chr7	25357839	25357843	4	LOC_Os07g42380
Deletion	Chr11	26326993	26326994	1
Deletion	Chr11	27296864	27296867	3
Deletion	Chr4	29497073	29497100	27	LOC_Os04g49430
Deletion	Chr6	29569779	29569791	12
Deletion	Chr4	29801143	29801162	19
Deletion	Chr6	29932460	29932461	1
Deletion	Chr1	42738107	42738109	2
Deletion	Chr1	42986245	42986251	6

Insertions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23593308	23593309	2
Insertion	Chr1	42456114	42456122	9
Insertion	Chr1	42907879	42907896	18
Insertion	Chr1	4636827	4636838	12
Insertion	Chr10	19038169	19038172	4
Insertion	Chr10	2528641	2528642	2
Insertion	Chr11	17085058	17085115	58
Insertion	Chr11	19670883	19670884	2
Insertion	Chr11	4888630	4888633	4
Insertion	Chr11	7254958	7254959	2
Insertion	Chr12	23551114	23551115	2
Insertion	Chr12	23566382	23566385	4
Insertion	Chr12	6728873	6728876	4
Insertion	Chr2	18556721	18556726	6	LOC_Os02g31060
Insertion	Chr2	18807659	18807707	49
Insertion	Chr2	19267013	19267014	2
Insertion	Chr2	20960937	20960938	2
Insertion	Chr2	8273567	8273568	2
Insertion	Chr3	16253168	16253168	1
Insertion	Chr4	16564311	16564332	22
Insertion	Chr4	17475534	17475537	4
Insertion	Chr4	33820414	33820414	1
Insertion	Chr4	4124944	4125002	59	LOC_Os04g07760
Insertion	Chr6	10358406	10358413	8	LOC_Os06g17840
Insertion	Chr6	23336427	23336428	2
Insertion	Chr6	25246934	25246935	2
Insertion	Chr6	26692883	26692883	1
Insertion	Chr6	7530175	7530175	1
Insertion	Chr7	11005952	11005976	25
Insertion	Chr7	22426877	22426880	4
Insertion	Chr7	8350546	8350557	12	LOC_Os07g14640
Insertion	Chr8	16622730	16622731	2
Insertion	Chr8	20060639	20060644	6
Insertion	Chr8	561857	561858	2
Insertion	Chr8	9879762	9879763	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3275137	16925910
Inversion	Chr1	7229235	33506545	LOC_Os01g57960

No Translocation

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