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Mutant Information |
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Mutant Name | FN-316 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-316 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 26
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 4633858 | T-C | HET | INTERGENIC | |
SBS | Chr1 | 5987617 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 8996973 | G-T | HET | UTR_3_PRIME | |
SBS | Chr1 | 15182094 | T-C | HET | INTERGENIC | |
SBS | Chr2 | 21379491 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 21725611 | T-G | HET | INTERGENIC | |
SBS | Chr3 | 23211887 | C-G | HET | INTERGENIC | |
SBS | Chr3 | 23592191 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g42400 |
SBS | Chr4 | 1466497 | T-G | HET | INTERGENIC | |
SBS | Chr4 | 4730918 | C-G | HOMO | INTERGENIC | |
SBS | Chr4 | 21386815 | C-G | HOMO | INTRON | |
SBS | Chr4 | 28475588 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 5479984 | A-T | HOMO | INTERGENIC | |
SBS | Chr5 | 18836457 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 8890965 | C-A | HET | UTR_5_PRIME | |
SBS | Chr6 | 23107233 | T-C | HET | INTRON | |
SBS | Chr6 | 23107237 | G-A | HET | INTRON | |
SBS | Chr7 | 10672518 | C-T | HET | INTRON | |
SBS | Chr7 | 15632644 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 4056670 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 4075131 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g07290 |
SBS | Chr8 | 4321861 | T-A | HET | INTERGENIC | |
SBS | Chr9 | 8832010 | C-A | HET | INTERGENIC | |
SBS | Chr9 | 18659604 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 5263382 | T-C | HOMO | INTERGENIC | |
SBS | Chr11 | 25971672 | G-A | HET | INTERGENIC |
Deletions: 9
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr5 | 22232048 | 22232048 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 21478192 | 21765342 | |
Inversion | Chr1 | 22154330 | 22181730 | LOC_Os01g39360 |
No Translocation