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Mutant Information

Mutant Name	FN-32 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-32 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr5	28472777	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g49620
SBS	Chr9	11207070	T-C	Homo	INTERGENIC
SBS	Chr9	12413265	T-C	Homo	UTR_3_PRIME
SBS	Chr10	13514315	T-C	Homo	INTERGENIC
SBS	Chr11	23142635	C-T	Homo	INTERGENIC
SBS	Chr11	23617133	G-A	Homo	INTRON
SBS	Chr11	27233370	A-T	Homo	INTERGENIC
SBS	Chr11	27446585	C-G	Homo	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2189253	2189254	1
Deletion	Chr8	3989031	3989044	13
Deletion	Chr5	4624173	4624176	3
Deletion	Chr3	5411096	5411124	28
Deletion	Chr2	6250367	6250368	1	LOC_Os02g12030
Deletion	Chr11	7389379	7389380	1
Deletion	Chr11	11417544	11491128	73584	14
Deletion	Chr12	16027273	16027315	42
Deletion	Chr1	19645832	19645834	2
Deletion	Chr2	20124377	20124383	6
Deletion	Chr3	22856215	22856217	2
Deletion	Chr3	22938211	22938212	1
Deletion	Chr11	23142857	23142859	2
Deletion	Chr6	26971010	26971018	8
Deletion	Chr7	27263001	27353000	90000	18
Deletion	Chr7	27356001	27484000	128000	22
Deletion	Chr1	33198813	33198814	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	16366855	16366855	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7507306	7640386	2
Inversion	Chr12	7507324	7640389	LOC_Os12g13590
Inversion	Chr2	15655598	16177269	2
Inversion	Chr2	15655631	16177288	LOC_Os02g27440
Inversion	Chr2	25566386	25733119	LOC_Os02g42520

No Translocation