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Mutant Information |
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Mutant Name | FN-325 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-325 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 21
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 34649017 | A-T | HOMO | INTRON | |
SBS | Chr2 | 10749298 | T-A | HET | INTERGENIC | |
SBS | Chr2 | 31911123 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g52130 |
SBS | Chr2 | 31911129 | G-C | HOMO | SYNONYMOUS_CODING | |
SBS | Chr3 | 17250900 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 29418318 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 13282958 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 30040177 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 7125642 | A-G | HET | INTRON | |
SBS | Chr6 | 9873073 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 16137526 | T-G | HET | INTERGENIC | |
SBS | Chr6 | 22150178 | G-A | HET | INTERGENIC | |
SBS | Chr6 | 25263014 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 7023145 | C-G | HOMO | INTRON | |
SBS | Chr9 | 3763247 | A-C | HET | UTR_5_PRIME | |
SBS | Chr9 | 13840611 | C-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr9 | 14822014 | A-G | HOMO | INTERGENIC | |
SBS | Chr9 | 14859792 | G-T | HOMO | INTERGENIC | |
SBS | Chr9 | 14859793 | G-T | HOMO | INTERGENIC | |
SBS | Chr11 | 7576846 | A-G | HET | INTERGENIC | |
SBS | Chr12 | 25363254 | G-C | HET | INTERGENIC |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 1583086 | 1583087 | 1 | |
Deletion | Chr5 | 3497937 | 3512794 | 14857 | 2 |
Deletion | Chr9 | 4765638 | 4765642 | 4 | LOC_Os09g08960 |
Deletion | Chr3 | 4782721 | 4782723 | 2 | |
Deletion | Chr1 | 7384457 | 7384459 | 2 | |
Deletion | Chr5 | 9316288 | 9316326 | 38 | |
Deletion | Chr2 | 10203204 | 10203210 | 6 | |
Deletion | Chr6 | 13807457 | 13807462 | 5 | |
Deletion | Chr4 | 19682269 | 19682270 | 1 | |
Deletion | Chr11 | 21192545 | 21192547 | 2 | |
Deletion | Chr11 | 26835430 | 26835433 | 3 | |
Deletion | Chr3 | 31096596 | 31096597 | 1 | |
Deletion | Chr2 | 31911113 | 31911120 | 7 | LOC_Os02g52130 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 3253467 | 3253467 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr12 | 2850911 | 3359118 |
No Translocation