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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34649017	A-T	HOMO	INTRON
SBS	Chr11	7576846	A-G	HET	INTERGENIC
SBS	Chr12	25363254	G-C	HET	INTERGENIC
SBS	Chr2	10749298	T-A	HET	INTERGENIC
SBS	Chr2	31911123	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g52130
SBS	Chr2	31911129	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr3	17250900	G-A	HET	INTERGENIC
SBS	Chr3	29418318	C-T	HET	INTERGENIC
SBS	Chr4	13282958	A-G	HET	INTERGENIC
SBS	Chr4	30040177	G-A	HOMO	INTERGENIC
SBS	Chr5	7125642	A-G	HET	INTRON
SBS	Chr6	16137526	T-G	HET	INTERGENIC
SBS	Chr6	22150178	G-A	HET	INTERGENIC
SBS	Chr6	25263014	C-T	HET	INTERGENIC
SBS	Chr6	9873073	G-A	HET	INTERGENIC
SBS	Chr8	7023145	C-G	HOMO	INTRON
SBS	Chr9	13840611	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	14822014	A-G	HOMO	INTERGENIC
SBS	Chr9	14859792	G-T	HOMO	INTERGENIC
SBS	Chr9	14859793	G-T	HOMO	INTERGENIC
SBS	Chr9	3763247	A-C	HET	UTR_5_PRIME

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1583086	1583087	1
Deletion	Chr5	3497937	3512794	14857	2
Deletion	Chr9	4765638	4765642	4	LOC_Os09g08960
Deletion	Chr3	4782721	4782723	2
Deletion	Chr1	7384457	7384459	2
Deletion	Chr5	9316288	9316326	38
Deletion	Chr2	10203204	10203210	6
Deletion	Chr6	13807457	13807462	5
Deletion	Chr4	19682269	19682270	1
Deletion	Chr11	21192545	21192547	2
Deletion	Chr11	26835430	26835433	3
Deletion	Chr3	31096596	31096597	1
Deletion	Chr2	31911113	31911120	7	LOC_Os02g52130

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3253467	3253467	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2850911	3359118

No Translocation

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