Search Results
| Mutant Information |
|---|
| Mutant Name | FN-328 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-328 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 16
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19050131 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 26022874 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g45810 |
| SBS | Chr3 | 8373162 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 30249506 | T-C | HET | INTRON | |
| SBS | Chr4 | 27854274 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 5478141 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 16745415 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 641038 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 14861659 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 3836228 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g07654 |
| SBS | Chr7 | 4567773 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 16525369 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 25951792 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 3224408 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 4280557 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 12817761 | T-C | HOMO | INTERGENIC |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 707126 | 707127 | 1 | |
| Deletion | Chr2 | 2043924 | 2043929 | 5 | LOC_Os02g04570 |
| Deletion | Chr9 | 3957725 | 3957730 | 5 | |
| Deletion | Chr7 | 4567777 | 4567781 | 4 | |
| Deletion | Chr5 | 5598630 | 5598637 | 7 | |
| Deletion | Chr2 | 5604266 | 5604268 | 2 | LOC_Os02g10650 |
| Deletion | Chr11 | 7758248 | 7758260 | 12 | |
| Deletion | Chr8 | 10639179 | 10639185 | 6 | LOC_Os08g17400 |
| Deletion | Chr8 | 12305314 | 12305319 | 5 | |
| Deletion | Chr12 | 13829962 | 13829988 | 26 | |
| Deletion | Chr3 | 14121398 | 14121413 | 15 | |
| Deletion | Chr4 | 14718091 | 14718092 | 1 | |
| Deletion | Chr6 | 15828203 | 15828207 | 4 | |
| Deletion | Chr12 | 16530527 | 16530540 | 13 | LOC_Os12g28020 |
| Deletion | Chr2 | 17369295 | 17369297 | 2 | |
| Deletion | Chr8 | 19200420 | 19200421 | 1 | |
| Deletion | Chr6 | 19790106 | 19790111 | 5 | |
| Deletion | Chr1 | 20813664 | 20813678 | 14 | LOC_Os01g37270 |
| Deletion | Chr4 | 24774633 | 24774635 | 2 | |
| Deletion | Chr1 | 32967701 | 32967710 | 9 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 11955082 | 12316711 | |
| Inversion | Chr5 | 11955129 | 12316717 | |
| Inversion | Chr8 | 26429283 | 27408552 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 3834285 | Chr3 | 30425973 | LOC_Os11g07580 |
| Translocation | Chr4 | 30247168 | Chr3 | 20336420 | LOC_Os03g36660 |