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Mutant Information

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19050131	A-G	HOMO	INTERGENIC
SBS	Chr1	26022874	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45810
SBS	Chr10	4280557	T-A	HET	INTERGENIC
SBS	Chr12	12817761	T-C	HOMO	INTERGENIC
SBS	Chr3	30249506	T-C	HET	INTRON
SBS	Chr3	8373162	C-T	HOMO	INTERGENIC
SBS	Chr4	27854274	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	16745415	T-A	HET	INTERGENIC
SBS	Chr5	5478141	G-T	HET	INTERGENIC
SBS	Chr6	14861659	A-G	HOMO	INTERGENIC
SBS	Chr6	641038	G-A	HOMO	INTERGENIC
SBS	Chr7	3836228	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g07654
SBS	Chr7	4567773	C-T	HET	INTERGENIC
SBS	Chr8	16525369	C-T	HOMO	INTERGENIC
SBS	Chr8	25951792	A-G	HET	INTERGENIC
SBS	Chr9	3224408	C-T	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	707126	707127	1
Deletion	Chr2	2043924	2043929	5	LOC_Os02g04570
Deletion	Chr9	3957725	3957730	5
Deletion	Chr7	4567777	4567781	4
Deletion	Chr5	5598630	5598637	7
Deletion	Chr2	5604266	5604268	2	LOC_Os02g10650
Deletion	Chr11	7758248	7758260	12
Deletion	Chr8	10639179	10639185	6	LOC_Os08g17400
Deletion	Chr8	12305314	12305319	5
Deletion	Chr12	13829962	13829988	26
Deletion	Chr3	14121398	14121413	15
Deletion	Chr4	14718091	14718092	1
Deletion	Chr6	15828203	15828207	4
Deletion	Chr12	16530527	16530540	13	LOC_Os12g28020
Deletion	Chr2	17369295	17369297	2
Deletion	Chr8	19200420	19200421	1
Deletion	Chr6	19790106	19790111	5
Deletion	Chr1	20813664	20813678	14	LOC_Os01g37270
Deletion	Chr4	24774633	24774635	2
Deletion	Chr1	32967701	32967710	9

No Insertion

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr5	11955082	12316711
Inversion	Chr5	11955129	12316717
Inversion	Chr8	26429283	27408552

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3834285	Chr3	30425973	LOC_Os11g07580
Translocation	Chr4	30247168	Chr3	20336420	LOC_Os03g36660

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