Search Results
| Mutant Information |
|---|
| Mutant Name | FN-329 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-329 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21079068 | C-A | HOMO | INTRON | |
| SBS | Chr2 | 3598467 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 18976628 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 21874259 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 22661945 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 13986414 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 33122697 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 7419975 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 8020138 | A-T | HET | INTRON | |
| SBS | Chr5 | 19456845 | T-C | HET | INTRON | |
| SBS | Chr6 | 539081 | T-G | HET | INTERGENIC | |
| SBS | Chr6 | 6181979 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 21561589 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 29454463 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 3804896 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 21578156 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr9 | 3237776 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 3237777 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 16972461 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g27920 |
| SBS | Chr10 | 9366745 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g18420 |
| SBS | Chr10 | 9366746 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g18420 |
| SBS | Chr10 | 15783638 | C-T | HOMO | INTRON | |
| SBS | Chr10 | 15783639 | G-A | HOMO | INTRON | |
| SBS | Chr10 | 20410102 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 170752 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 13708979 | A-C | HOMO | UTR_3_PRIME | |
| SBS | Chr12 | 1554271 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 10844427 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 12375960 | T-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 18826126 | G-A | HET | STOP_GAINED | LOC_Os12g31280 |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 336067 | 336068 | 1 | |
| Deletion | Chr9 | 3237759 | 3237767 | 8 | |
| Deletion | Chr8 | 8220599 | 8220600 | 1 | LOC_Os08g13790 |
| Deletion | Chr1 | 13166249 | 13166253 | 4 | |
| Deletion | Chr10 | 14701433 | 14709133 | 7700 | 2 |
| Deletion | Chr2 | 15628849 | 15628866 | 17 | |
| Deletion | Chr6 | 15877001 | 16975000 | 1098000 | 150 |
| Deletion | Chr9 | 16084331 | 16084353 | 22 | |
| Deletion | Chr2 | 17155085 | 17155086 | 1 | |
| Deletion | Chr2 | 17303670 | 17303675 | 5 | |
| Deletion | Chr10 | 18899571 | 18899572 | 1 | |
| Deletion | Chr7 | 19026030 | 19026032 | 2 | |
| Deletion | Chr4 | 20465225 | 20465226 | 1 | |
| Deletion | Chr6 | 23009912 | 23009913 | 1 | |
| Deletion | Chr12 | 23726263 | 23726267 | 4 | LOC_Os12g38620 |
| Deletion | Chr12 | 25196678 | 25196679 | 1 | LOC_Os12g40700 |
| Deletion | Chr4 | 30934845 | 30934882 | 37 | |
| Deletion | Chr2 | 31428043 | 31428044 | 1 | |
| Deletion | Chr4 | 32193249 | 32193266 | 17 | |
| Deletion | Chr2 | 35523958 | 35523962 | 4 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 21532701 | 21532701 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 17089748 | 17106122 | |
| Inversion | Chr9 | 17089800 | 17106142 | |
| Inversion | Chr5 | 24201710 | 24288735 | LOC_Os05g41480 |
| Inversion | Chr5 | 24201847 | 24288812 | LOC_Os05g41480 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 14701437 | Chr1 | 21238634 | |
| Translocation | Chr10 | 14709121 | Chr1 | 21238633 | LOC_Os10g28280 |
| Translocation | Chr9 | 18989959 | Chr6 | 15877000 | LOC_Os09g31486 |
| Translocation | Chr6 | 27901462 | Chr4 | 4392098 | LOC_Os04g08230 |
| Translocation | Chr6 | 27901463 | Chr4 | 4390583 | LOC_Os04g08230 |