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Mutant Information

Mutant Name	FN-33 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-33 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28335535	C-T	Homo	INTERGENIC
SBS	Chr1	28335553	C-T	Homo	INTERGENIC
SBS	Chr3	9690927	T-A	Homo	INTERGENIC
SBS	Chr4	20323220	G-A	Homo	INTERGENIC
SBS	Chr6	16456434	A-T	Homo	INTERGENIC
SBS	Chr10	12127673	G-A	Homo	INTERGENIC
SBS	Chr12	22442401	T-A	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3724430	3724431	1	LOC_Os02g07250
Deletion	Chr7	5495082	5495087	5
Deletion	Chr11	10323398	10323418	20
Deletion	Chr6	16456062	16456066	4
Deletion	Chr11	16465375	16465382	7
Deletion	Chr11	17347036	17347038	2
Deletion	Chr11	18145459	18148463	3004	LOC_Os11g31160
Deletion	Chr12	18873425	18873427	2
Deletion	Chr11	20141236	20141237	1	LOC_Os11g34364
Deletion	Chr5	20766325	20766338	13
Deletion	Chr1	27564800	27564807	7
Deletion	Chr3	35987040	35987050	10

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	17957840	17957840	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6281012	6284179	LOC_Os06g11840

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	24249491	Chr6	6284172