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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20280060	C-A	HOMO	INTERGENIC
SBS	Chr1	40982899	C-T	HET	INTRON
SBS	Chr11	7918355	G-T	HET	INTERGENIC
SBS	Chr11	7918356	A-T	HET	INTERGENIC
SBS	Chr12	1283347	G-A	HET	INTERGENIC
SBS	Chr12	4247888	G-A	HOMO	INTERGENIC
SBS	Chr3	22521558	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g40510
SBS	Chr3	7954317	A-T	HOMO	INTERGENIC
SBS	Chr4	6240075	A-C	HET	STOP_GAINED	LOC_Os04g11420
SBS	Chr5	1583087	G-A	HET	INTERGENIC
SBS	Chr5	17048812	T-C	HOMO	INTERGENIC
SBS	Chr5	18049676	G-A	HET	INTERGENIC
SBS	Chr5	5711298	T-G	HET	INTERGENIC
SBS	Chr6	10202955	G-C	HET	INTERGENIC
SBS	Chr6	24828058	G-T	HET	INTRON
SBS	Chr6	8470777	A-G	HET	INTRON
SBS	Chr6	9585376	G-A	HET	INTERGENIC
SBS	Chr7	2096924	G-A	HOMO	INTERGENIC
SBS	Chr7	4778059	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g09160
SBS	Chr8	24751001	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g39174
SBS	Chr8	8807498	C-T	HET	INTERGENIC
SBS	Chr9	10276434	C-A	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1123457	1123458	1
Deletion	Chr4	2990671	2990697	26	LOC_Os04g05820
Deletion	Chr1	3137001	3177000	40000	7
Deletion	Chr10	9234734	9234745	11
Deletion	Chr6	9654094	9654137	43
Deletion	Chr12	10386282	10386294	12
Deletion	Chr6	10879696	10879706	10
Deletion	Chr5	13549337	13549377	40
Deletion	Chr10	13621348	13621353	5
Deletion	Chr5	15550098	15550099	1
Deletion	Chr6	15604675	15604685	10
Deletion	Chr5	18706226	18706251	25
Deletion	Chr4	19724235	19724237	2
Deletion	Chr7	26316001	26649000	333000	60
Deletion	Chr2	32999287	32999302	15

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	26833036	26833036	1
Insertion	Chr3	25507476	25507477	2
Insertion	Chr8	15195584	15195595	12

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1182145	1828269	LOC_Os07g03100
Inversion	Chr7	26226818	26316267

No Translocation

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