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Mutant Information

Mutant NameFN-330 [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN-330 Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 22
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr120280060C-AHOMOINTERGENIC
SBSChr140982899C-THETINTRON
SBSChr117918355G-THETINTERGENIC
SBSChr117918356A-THETINTERGENIC
SBSChr121283347G-AHETINTERGENIC
SBSChr124247888G-AHOMOINTERGENIC
SBSChr322521558A-GHOMONON_SYNONYMOUS_CODINGLOC_Os03g40510
SBSChr37954317A-THOMOINTERGENIC
SBSChr46240075A-CHETSTOP_GAINEDLOC_Os04g11420
SBSChr51583087G-AHETINTERGENIC
SBSChr517048812T-CHOMOINTERGENIC
SBSChr518049676G-AHETINTERGENIC
SBSChr55711298T-GHETINTERGENIC
SBSChr610202955G-CHETINTERGENIC
SBSChr624828058G-THETINTRON
SBSChr68470777A-GHETINTRON
SBSChr69585376G-AHETINTERGENIC
SBSChr72096924G-AHOMOINTERGENIC
SBSChr74778059T-AHOMONON_SYNONYMOUS_CODINGLOC_Os07g09160
SBSChr824751001C-GHOMONON_SYNONYMOUS_CODINGLOC_Os08g39174
SBSChr88807498C-THETINTERGENIC
SBSChr910276434C-AHOMOINTERGENIC

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr2112345711234581
DeletionChr42990671299069726LOC_Os04g05820
DeletionChr131370013177000400007
DeletionChr109234734923474511
DeletionChr69654094965413743
DeletionChr12103862821038629412
DeletionChr6108796961087970610
DeletionChr5135493371354937740
DeletionChr1013621348136213535
DeletionChr515550098155500991
DeletionChr6156046751560468510
DeletionChr5187062261870625125
DeletionChr419724235197242372
DeletionChr7263160012664900033300060
DeletionChr2329992873299930215

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr126833036268330361
InsertionChr325507476255074772
InsertionChr8151955841519559512

Inversions: 2
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr711821451828269LOC_Os07g03100
InversionChr72622681826316267

No Translocation