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Mutant Information |
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Mutant Name | FN-330 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-330 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 22
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 20280060 | C-A | HOMO | INTERGENIC | |
SBS | Chr1 | 40982899 | C-T | HET | INTRON | |
SBS | Chr11 | 7918355 | G-T | HET | INTERGENIC | |
SBS | Chr11 | 7918356 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 1283347 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 4247888 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 22521558 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g40510 |
SBS | Chr3 | 7954317 | A-T | HOMO | INTERGENIC | |
SBS | Chr4 | 6240075 | A-C | HET | STOP_GAINED | LOC_Os04g11420 |
SBS | Chr5 | 1583087 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 17048812 | T-C | HOMO | INTERGENIC | |
SBS | Chr5 | 18049676 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 5711298 | T-G | HET | INTERGENIC | |
SBS | Chr6 | 10202955 | G-C | HET | INTERGENIC | |
SBS | Chr6 | 24828058 | G-T | HET | INTRON | |
SBS | Chr6 | 8470777 | A-G | HET | INTRON | |
SBS | Chr6 | 9585376 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 2096924 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 4778059 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g09160 |
SBS | Chr8 | 24751001 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g39174 |
SBS | Chr8 | 8807498 | C-T | HET | INTERGENIC | |
SBS | Chr9 | 10276434 | C-A | HOMO | INTERGENIC |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 1123457 | 1123458 | 1 | |
Deletion | Chr4 | 2990671 | 2990697 | 26 | LOC_Os04g05820 |
Deletion | Chr1 | 3137001 | 3177000 | 40000 | 7 |
Deletion | Chr10 | 9234734 | 9234745 | 11 | |
Deletion | Chr6 | 9654094 | 9654137 | 43 | |
Deletion | Chr12 | 10386282 | 10386294 | 12 | |
Deletion | Chr6 | 10879696 | 10879706 | 10 | |
Deletion | Chr5 | 13549337 | 13549377 | 40 | |
Deletion | Chr10 | 13621348 | 13621353 | 5 | |
Deletion | Chr5 | 15550098 | 15550099 | 1 | |
Deletion | Chr6 | 15604675 | 15604685 | 10 | |
Deletion | Chr5 | 18706226 | 18706251 | 25 | |
Deletion | Chr4 | 19724235 | 19724237 | 2 | |
Deletion | Chr7 | 26316001 | 26649000 | 333000 | 60 |
Deletion | Chr2 | 32999287 | 32999302 | 15 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 26833036 | 26833036 | 1 | |
Insertion | Chr3 | 25507476 | 25507477 | 2 | |
Insertion | Chr8 | 15195584 | 15195595 | 12 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr7 | 1182145 | 1828269 | LOC_Os07g03100 |
Inversion | Chr7 | 26226818 | 26316267 |
No Translocation