Search Nipponbare
Mutant Information |
---|
Mutant Name | FN-333 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-333 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
---|
Single base substitutions: 18
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 11510599 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 20846094 | T-C | HET | INTERGENIC | |
SBS | Chr10 | 11783731 | G-A | HOMO | INTERGENIC | |
SBS | Chr12 | 19366720 | G-C | HOMO | INTERGENIC | |
SBS | Chr2 | 2764867 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 27980559 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g49120 |
SBS | Chr3 | 3268638 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g06510 |
SBS | Chr4 | 20460841 | A-T | HET | INTRON | |
SBS | Chr4 | 23025669 | A-T | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 3904681 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g07340 |
SBS | Chr5 | 14139309 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 12936826 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 23457275 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 16701116 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 21914316 | A-T | HET | INTRON | |
SBS | Chr7 | 23395834 | A-T | HOMO | INTRON | |
SBS | Chr8 | 14224285 | T-C | HET | INTRON | |
SBS | Chr9 | 2354533 | T-C | HET | INTERGENIC |
Deletions: 11
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 35079879 | 35079879 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 12036694 | 17004684 | LOC_Os06g29650 |
Inversion | Chr11 | 14064739 | 20190798 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 23711996 | Chr2 | 19344581 |