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Mutant Information

Mutant Name	FN-333 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-333 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11510599	C-T	HET	INTERGENIC
SBS	Chr1	20846094	T-C	HET	INTERGENIC
SBS	Chr10	11783731	G-A	HOMO	INTERGENIC
SBS	Chr12	19366720	G-C	HOMO	INTERGENIC
SBS	Chr2	2764867	A-T	HET	INTERGENIC
SBS	Chr3	27980559	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49120
SBS	Chr3	3268638	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g06510
SBS	Chr4	20460841	A-T	HET	INTRON
SBS	Chr4	23025669	A-T	HET	SYNONYMOUS_CODING
SBS	Chr4	3904681	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g07340
SBS	Chr5	14139309	A-G	HET	INTERGENIC
SBS	Chr6	12936826	G-A	HOMO	INTERGENIC
SBS	Chr6	23457275	C-T	HOMO	INTERGENIC
SBS	Chr7	16701116	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	21914316	A-T	HET	INTRON
SBS	Chr7	23395834	A-T	HOMO	INTRON
SBS	Chr8	14224285	T-C	HET	INTRON
SBS	Chr9	2354533	T-C	HET	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1572492	1572506	14
Deletion	Chr11	3822883	3822884	1
Deletion	Chr5	7015168	7015173	5
Deletion	Chr11	9882001	10209000	327000	37
Deletion	Chr11	10215001	10382000	167000	19
Deletion	Chr2	12901656	12901672	16
Deletion	Chr1	13459443	13459454	11
Deletion	Chr5	19414505	19414514	9
Deletion	Chr4	30176735	30176753	18
Deletion	Chr3	32312959	32312961	2
Deletion	Chr4	32987362	32987363	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	35079879	35079879	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12036694	17004684	LOC_Os06g29650
Inversion	Chr11	14064739	20190798

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	23711996	Chr2	19344581