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| Mutant Information |
|---|
| Mutant Name | FN-334 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-334 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12658613 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 1868501 | G-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr1 | 42063109 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 13424894 | A-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 13491442 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 4569621 | C-A | HOMO | INTRON | |
| SBS | Chr11 | 17597017 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 18398403 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 25661792 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 14130854 | A-T | HOMO | INTRON | |
| SBS | Chr2 | 31453516 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 31453517 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 31985560 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 36204771 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g64070 |
| SBS | Chr4 | 14892899 | T-A | HET | INTRON | |
| SBS | Chr4 | 157969 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 12270422 | C-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 24458036 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g40810 |
| SBS | Chr7 | 2768423 | C-A | HET | UTR_3_PRIME | |
| SBS | Chr7 | 3105361 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr7 | 9267216 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 23084478 | G-C | HET | INTERGENIC | |
| SBS | Chr9 | 7337720 | T-A | HET | INTRON |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1062154 | 1062160 | 6 | |
| Deletion | Chr12 | 3829001 | 3864000 | 35000 | 5 |
| Deletion | Chr4 | 5305001 | 5621000 | 316000 | 51 |
| Deletion | Chr7 | 9033343 | 9033351 | 8 | |
| Deletion | Chr3 | 9481301 | 9481305 | 4 | LOC_Os03g17050 |
| Deletion | Chr10 | 10170776 | 10170777 | 1 | |
| Deletion | Chr7 | 13397201 | 13397202 | 1 | |
| Deletion | Chr6 | 14651564 | 14651570 | 6 | |
| Deletion | Chr4 | 16109589 | 16109607 | 18 | |
| Deletion | Chr4 | 17020243 | 17020250 | 7 | |
| Deletion | Chr10 | 19383100 | 19383131 | 31 | |
| Deletion | Chr7 | 19538479 | 19538480 | 1 | |
| Deletion | Chr12 | 20099383 | 20099390 | 7 | |
| Deletion | Chr7 | 21754959 | 21754960 | 1 | LOC_Os07g36390 |
| Deletion | Chr3 | 25075268 | 25092826 | 17558 | 2 |
| Deletion | Chr12 | 25665220 | 25665222 | 2 | LOC_Os12g41430 |
| Deletion | Chr5 | 26618236 | 26618237 | 1 | |
| Deletion | Chr6 | 27044678 | 27044679 | 1 | |
| Deletion | Chr2 | 32919577 | 32919578 | 1 |
Insertions: 5
No Inversion
No Translocation