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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5170020	C-T	HET	INTERGENIC
SBS	Chr1	7568839	C-T	HET	INTERGENIC
SBS	Chr1	13878753	C-T	HOMO	INTERGENIC
SBS	Chr1	38041961	C-T	HET	INTRON
SBS	Chr2	10416176	G-A	HOMO	INTERGENIC
SBS	Chr2	15878069	A-G	HOMO	INTERGENIC
SBS	Chr2	21599967	A-T	HET	INTRON
SBS	Chr3	763340	C-T	HET	INTERGENIC
SBS	Chr3	14799387	T-A	HET	INTERGENIC
SBS	Chr3	35538309	G-A	HET	INTERGENIC
SBS	Chr4	16827767	G-A	HET	INTERGENIC
SBS	Chr4	23737753	G-T	HET	INTRON
SBS	Chr4	25068562	A-G	HET	INTRON
SBS	Chr5	5728893	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g10540
SBS	Chr5	10725039	C-T	HET	INTRON
SBS	Chr6	907564	G-A	HET	INTERGENIC
SBS	Chr6	7410395	G-A	HET	INTERGENIC
SBS	Chr6	10146362	C-T	HET	INTERGENIC
SBS	Chr7	5485502	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g10200
SBS	Chr7	6368225	C-G	HOMO	INTERGENIC
SBS	Chr7	18811758	A-T	HOMO	INTERGENIC
SBS	Chr7	18811760	A-T	HOMO	INTERGENIC
SBS	Chr7	20922143	C-A	HET	INTERGENIC
SBS	Chr7	23199582	G-C	HET	INTERGENIC
SBS	Chr7	25446474	A-T	HET	INTERGENIC
SBS	Chr9	20708310	G-T	HET	INTERGENIC
SBS	Chr9	20708311	C-T	HET	INTERGENIC
SBS	Chr9	22921082	T-C	HET	INTRON
SBS	Chr10	1765985	T-A	HET	INTERGENIC
SBS	Chr10	10517083	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g20750
SBS	Chr10	13640841	G-T	HOMO	INTERGENIC
SBS	Chr10	15995155	A-G	HOMO	INTERGENIC
SBS	Chr11	12836226	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22380
SBS	Chr11	13728548	C-T	HET	INTERGENIC
SBS	Chr11	15345876	A-T	HET	INTERGENIC
SBS	Chr11	15577217	C-T	HET	INTERGENIC
SBS	Chr12	5480418	A-T	HET	INTERGENIC
SBS	Chr12	12528677	T-C	HET	INTERGENIC
SBS	Chr12	25050252	G-A	HET	INTERGENIC
SBS	Chr12	25250301	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g40790
SBS	Chr12	27446979	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g44280

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3461458	3461851	393
Deletion	Chr12	3799431	3799432	1
Deletion	Chr5	5331316	5331320	4	LOC_Os05g09480
Deletion	Chr8	9170029	9170034	5
Deletion	Chr11	9797532	9797549	17
Deletion	Chr2	10074660	10074661	1	LOC_Os02g17500
Deletion	Chr10	14289096	14289103	7	LOC_Os10g27110
Deletion	Chr8	15457663	15457677	14
Deletion	Chr11	15536965	15537004	39
Deletion	Chr1	16910236	16910243	7
Deletion	Chr1	17822712	17822713	1
Deletion	Chr1	20403062	20403080	18
Deletion	Chr2	22514839	22514842	3	LOC_Os02g37254
Deletion	Chr11	24241474	24241475	1
Deletion	Chr7	26360278	26360784	506
Deletion	Chr4	26675079	26675080	1	LOC_Os04g45090
Deletion	Chr7	28875945	28875946	1
Deletion	Chr1	30905367	30905369	2
Deletion	Chr3	31477974	31477993	19
Deletion	Chr3	32020800	32020814	14
Deletion	Chr3	34258234	34259423	1189	LOC_Os03g60240
Deletion	Chr3	35319588	35319589	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	1455532	1455543	12
Insertion	Chr1	39804019	39804020	2
Insertion	Chr3	16708020	16708021	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3783901	5169919	LOC_Os01g07860
Inversion	Chr7	7450857	10097744
Inversion	Chr7	7451026	10098265	LOC_Os07g17170
Inversion	Chr7	10097747	23199001	LOC_Os07g38620
Inversion	Chr7	10098263	23198996	2
Inversion	Chr3	26228155	34259386	LOC_Os03g60240
Inversion	Chr3	32654658	32883880	LOC_Os03g57690

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9725498	Chr4	10817551

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