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| Mutant Information |
|---|
| Mutant Name | FN-336 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-336 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 41038070 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 41744978 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 24435275 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g40830 |
| SBS | Chr12 | 247130 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr12 | 25947110 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g41870 |
| SBS | Chr2 | 10402420 | C-G | HET | INTERGENIC | |
| SBS | Chr2 | 12970496 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g21810 |
| SBS | Chr2 | 21863320 | A-G | HOMO | INTRON | |
| SBS | Chr2 | 32948553 | T-C | HET | INTRON | |
| SBS | Chr2 | 8817414 | T-G | HET | INTERGENIC | |
| SBS | Chr4 | 24818122 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 27920078 | A-T | HOMO | INTRON | |
| SBS | Chr4 | 5173443 | T-G | HET | INTERGENIC | |
| SBS | Chr5 | 24802173 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 26342962 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 27190350 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g47450 |
| SBS | Chr5 | 9445913 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 11135114 | A-C | HET | INTERGENIC | |
| SBS | Chr6 | 12833824 | A-C | HET | INTERGENIC | |
| SBS | Chr6 | 14007436 | G-A | HET | INTRON | |
| SBS | Chr6 | 14007437 | T-G | HET | INTRON | |
| SBS | Chr6 | 26165132 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 14622976 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 22529667 | A-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 3415292 | G-T | HET | INTRON | |
| SBS | Chr7 | 4018019 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 4018020 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 12564748 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g21000 |
| SBS | Chr8 | 23688601 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 8783 | T-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 4995258 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g09330 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2502613 | 2502614 | 1 | |
| Deletion | Chr1 | 3472508 | 3472513 | 5 | |
| Deletion | Chr4 | 4926846 | 4926853 | 7 | |
| Deletion | Chr8 | 5574892 | 5574893 | 1 | |
| Deletion | Chr12 | 6921550 | 6921557 | 7 | |
| Deletion | Chr1 | 8481250 | 8481260 | 10 | |
| Deletion | Chr6 | 8834001 | 8992000 | 158000 | 23 |
| Deletion | Chr6 | 9003001 | 9064000 | 61000 | 9 |
| Deletion | Chr6 | 9075001 | 9426000 | 351000 | 50 |
| Deletion | Chr4 | 10225546 | 10225547 | 1 | LOC_Os04g18490 |
| Deletion | Chr2 | 10388774 | 10388778 | 4 | LOC_Os02g17940 |
| Deletion | Chr6 | 10853026 | 10853044 | 18 | |
| Deletion | Chr2 | 11320517 | 11320519 | 2 | |
| Deletion | Chr6 | 17609610 | 17609613 | 3 | LOC_Os06g30460 |
| Deletion | Chr12 | 18013236 | 18013242 | 6 | LOC_Os12g30080 |
| Deletion | Chr4 | 24295879 | 24295888 | 9 | |
| Deletion | Chr11 | 25583005 | 25583006 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 17835352 | 17835355 | 4 |
No Inversion
No Translocation