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| Mutant Information |
|---|
| Mutant Name | FN-339 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-339 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16305129 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 12061863 | A-T | HET | INTRON | |
| SBS | Chr11 | 10820182 | C-G | HET | INTERGENIC | |
| SBS | Chr11 | 9844391 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 8922609 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27218353 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 4434320 | C-A | HOMO | INTRON | |
| SBS | Chr3 | 14422760 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 2991480 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 24360685 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 1762616 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr5 | 1792170 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 20183329 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27909378 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 28510664 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 14879282 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 2955634 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g06350 |
| SBS | Chr7 | 24596961 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g41090 |
| SBS | Chr8 | 18272390 | G-A | HET | INTRON | |
| SBS | Chr8 | 19170691 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 5670420 | G-A | HOMO | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1546836 | 1546837 | 1 | |
| Deletion | Chr12 | 2127317 | 2127318 | 1 | |
| Deletion | Chr12 | 2702947 | 2702974 | 27 | |
| Deletion | Chr4 | 4939579 | 4939580 | 1 | |
| Deletion | Chr12 | 7443237 | 7443238 | 1 | |
| Deletion | Chr12 | 8833878 | 8833879 | 1 | |
| Deletion | Chr12 | 11066314 | 11066321 | 7 | |
| Deletion | Chr12 | 13007371 | 13007372 | 1 | |
| Deletion | Chr8 | 16032001 | 16272000 | 240000 | 43 |
| Deletion | Chr8 | 16538519 | 16538531 | 12 | LOC_Os08g27070 |
| Deletion | Chr8 | 17268651 | 17268652 | 1 | LOC_Os08g28290 |
| Deletion | Chr5 | 20167680 | 20167681 | 1 | |
| Deletion | Chr12 | 23906716 | 23906717 | 1 | |
| Deletion | Chr3 | 25263134 | 25263135 | 1 | |
| Deletion | Chr5 | 28865420 | 28865425 | 5 | |
| Deletion | Chr3 | 29621127 | 29621129 | 2 | |
| Deletion | Chr2 | 32168028 | 32168033 | 5 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 34768945 | 34768945 | 1 | |
| Insertion | Chr6 | 4577182 | 4577182 | 1 |
No Inversion
No Translocation