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Mutant Information |
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Mutant Name | FN-34 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-34 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 8
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 31611022 | C-T | Homo | SYNONYMOUS_CODING | |
SBS | Chr1 | 35532642 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 34490604 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g60670 |
SBS | Chr5 | 22437179 | A-T | Homo | UTR_5_PRIME | |
SBS | Chr6 | 24180715 | C-T | Homo | SYNONYMOUS_CODING | |
SBS | Chr7 | 28169912 | G-A | Homo | INTERGENIC | |
SBS | Chr11 | 19041145 | A-T | Homo | INTERGENIC | |
SBS | Chr12 | 4642090 | T-A | Homo | INTERGENIC |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 3340103 | 3340106 | 3 | LOC_Os07g06834 |
Deletion | Chr5 | 5161566 | 5161588 | 22 | |
Deletion | Chr9 | 5892858 | 5892864 | 6 | |
Deletion | Chr10 | 13725923 | 13725930 | 7 | |
Deletion | Chr3 | 14516001 | 14559000 | 43000 | 13 |
Deletion | Chr10 | 16909659 | 16909665 | 6 | |
Deletion | Chr2 | 19558746 | 19558753 | 7 | |
Deletion | Chr6 | 19598001 | 19674000 | 76000 | 13 |
Deletion | Chr2 | 20387821 | 20387827 | 6 | |
Deletion | Chr4 | 24754931 | 24754938 | 7 | |
Deletion | Chr3 | 26340520 | 26340526 | 6 | LOC_Os03g46550 |
Deletion | Chr6 | 28888174 | 28888175 | 1 | |
Deletion | Chr1 | 42795629 | 42795636 | 7 | |
Deletion | Chr1 | 42965758 | 42965760 | 2 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 24289012 | 24289013 | 2 | |
Insertion | Chr1 | 25323770 | 25323770 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr3 | 14038779 | 15469685 | LOC_Os03g27019 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 13784113 | Chr1 | 7081411 | 2 |
Translocation | Chr11 | 13784116 | Chr1 | 7073979 | LOC_Os11g24180 |