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Mutant Information

Mutant Name	FN-34 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-34 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31611022	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	35532642	C-T	Homo	INTERGENIC
SBS	Chr11	19041145	A-T	Homo	INTERGENIC
SBS	Chr12	4642090	T-A	Homo	INTERGENIC
SBS	Chr3	34490604	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g60670
SBS	Chr5	22437179	A-T	Homo	UTR_5_PRIME
SBS	Chr6	24180715	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	28169912	G-A	Homo	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3340103	3340106	3	LOC_Os07g06834
Deletion	Chr5	5161566	5161588	22
Deletion	Chr9	5892858	5892864	6
Deletion	Chr10	13725923	13725930	7
Deletion	Chr3	14516001	14559000	43000	13
Deletion	Chr10	16909659	16909665	6
Deletion	Chr2	19558746	19558753	7
Deletion	Chr6	19598001	19674000	76000	13
Deletion	Chr2	20387821	20387827	6
Deletion	Chr4	24754931	24754938	7
Deletion	Chr3	26340520	26340526	6	LOC_Os03g46550
Deletion	Chr6	28888174	28888175	1
Deletion	Chr1	42795629	42795636	7
Deletion	Chr1	42965758	42965760	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25323770	25323770	1
Insertion	Chr7	24289012	24289013	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14038779	15469685	LOC_Os03g27019

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13784113	Chr1	7081411	2
Translocation	Chr11	13784116	Chr1	7073979	LOC_Os11g24180