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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	42549954	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g73430
SBS	Chr1	4376542	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g08750
SBS	Chr1	9654668	G-A	HET	INTERGENIC
SBS	Chr10	13809827	C-G	HOMO	INTERGENIC
SBS	Chr11	16385278	C-T	HOMO	INTERGENIC
SBS	Chr11	16385279	A-T	HOMO	INTERGENIC
SBS	Chr11	2166157	G-C	HET	INTERGENIC
SBS	Chr12	5263791	C-G	HOMO	INTERGENIC
SBS	Chr2	10650572	T-G	HOMO	INTRON
SBS	Chr2	2249828	A-G	HET	INTERGENIC
SBS	Chr2	2924630	G-A	HET	INTRON
SBS	Chr2	7126357	T-A	HET	UTR_3_PRIME
SBS	Chr3	14643017	G-A	HET	STOP_GAINED	LOC_Os03g25590
SBS	Chr3	2423689	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05000
SBS	Chr3	33686502	G-A	HOMO	INTRON
SBS	Chr3	34853007	A-G	HET	INTERGENIC
SBS	Chr4	1355620	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03200
SBS	Chr4	28164503	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47460
SBS	Chr6	10022789	G-A	HOMO	INTERGENIC
SBS	Chr6	24377401	G-A	HET	INTERGENIC
SBS	Chr6	31153956	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g51430
SBS	Chr6	9103552	T-C	HOMO	INTERGENIC
SBS	Chr7	4273251	A-G	HET	INTERGENIC
SBS	Chr8	16214692	G-T	HOMO	INTERGENIC
SBS	Chr8	7053258	G-A	HET	INTERGENIC
SBS	Chr9	13195474	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g21790
SBS	Chr9	2208603	T-C	HOMO	INTRON
SBS	Chr9	4509515	C-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	48056	48067	11
Deletion	Chr11	823467	823469	2	LOC_Os11g02610
Deletion	Chr12	1176524	1176536	12
Deletion	Chr3	1253500	1254121	621
Deletion	Chr5	2137589	2137590	1
Deletion	Chr11	3332420	3332483	63	LOC_Os11g06810
Deletion	Chr3	3860190	3860191	1	LOC_Os03g07580
Deletion	Chr7	5748306	5748326	20
Deletion	Chr2	8130531	8130539	8
Deletion	Chr12	8159802	8159810	8
Deletion	Chr4	11673295	11673297	2
Deletion	Chr9	12397379	12397392	13
Deletion	Chr5	13387647	13388305	658	LOC_Os05g23430
Deletion	Chr10	13629756	13629797	41
Deletion	Chr4	14620732	14620738	6
Deletion	Chr10	14914610	14914614	4
Deletion	Chr1	16355535	16358221	2686	LOC_Os01g29190
Deletion	Chr11	16372828	16372830	2
Deletion	Chr6	26260056	26260070	14
Deletion	Chr1	28370391	28370394	3	LOC_Os01g49340
Deletion	Chr3	29154006	29154007	1
Deletion	Chr2	33450337	33450351	14
Deletion	Chr2	33683494	33683501	7
Deletion	Chr1	34784175	34784187	12
Deletion	Chr1	35637644	35637649	5

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	38205486	38205487	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	28457850	28592902	LOC_Os07g47860

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	924355	Chr6	24028763	LOC_Os11g02780
Translocation	Chr11	1393556	Chr6	24028759	LOC_Os11g03590
Translocation	Chr12	16513845	Chr3	10722283
Translocation	Chr12	16513862	Chr3	10719554
Translocation	Chr4	23716375	Chr2	33948995	LOC_Os04g39814

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